Report for Sequence Feature Glyma17g06440
Feature Type: gene_model
Chromosome: Gm17
Start: 4584604
stop: 4586124
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g06440
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
UniRef100_I1MSJ4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSJ4_SOYBN
SoyBase E_val: 8.00E-73 ISS
Expression Patterns of Glyma17g06440
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g06440
Paralog Evidence Comments
Glyma13g00375 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g06440 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g057000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g06440
Transcripts of Glyma17g06440
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g06440.3 sequence type=transcript gene model=Glyma17g06440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TCACCCCACCCCCCCTCCACCTTCTTTCTTCTCTCTCATATATCTGTCTCTCTTTAAGCGCATCCCATCATCACCCTCTCAATTTCTCTCTGCACGCCTTCATGCCAAACCAAACATTAAATTAATTTTCTACTACCATACCATCATAGTAATTCATAACACTGAATTTTGTTGCTATAGCTAGCTAGCTCCACATATGGGTCTCGAAATCCTAGACGAATTTCGGCCAATTATGCCCATCCGAACAGTTCCTGTTCCTAAGGTTAGAACCTTCAGCCAAGGCTCGGAGCTGGTAGAGGCATCAGCGAAGGAGGAGATGCTGGTGCAAGAGTGCCACACACCCACGTCATCATCAAAAGTGGCTCAAACGTTGTTGGTTTGTCCACCACCTCCGAAGAAACCACGAGTGTCCAGAAGGACTTCTCATTCTCATTCTCAAGCTGGCTTCTTTCAAGTGCCCCACGATGATCTCGCTTCTGTCTTTCTGCTTCGGACCAAACCTTCCGTTCCGAGGAAGCTCTTTGCTAGCTAGCCACAAAATACTTCTCTTCTTCACCACACCCAATGGAGCGAGGTGTGGTAAGATGGATCTGGAAGTAGCTAATTAAAAGAGTTAGAATCATGCATATAGAGGAAGCTTTAATTAGTTGTGAAATTTGACAATGGGCAAGTATGTTAAAGGTTTAAATAATTCTAAATTTTCCTATATACCCTCCTGCTAAATTCTTCTACTTGTTGTAAGATAGAACATTACTAGCGGATTTGAGAACTTGATCCACCACTACGAAGACAACGGGACATACAACAATCACTCCAAAAGACCGTGCTTTGGAAGTTTGTTATTTATCCTCCCTCTAGCTTACCAGTTACCACCTTAATAGCCGTTTTGTAATCTAGCTTAGCCTTGTGTTCTTTGGGAAAAAACAATGACATAAAAGGAAGTTATTAATGTTCTAGTTGGCTTGTTCACAAAACCAGAAAATGTAATGTGTCTACACAACATTGTCAAGGGCGTGCCTATGTAAACTACGATTATAATCCCTCAAAGATACGGATACCACAATTTTCATATATTTGATCCATAGTTTTAAA
Coding sequences of Glyma17g06440
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g06440.2 sequence type=CDS gene model=Glyma17g06440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTCTCGAAATCCTAGACGAATTTCGGCCAATTATGCCCATCCGAACAGTTCCTGTTCCTAAGGTTAGAACCTTCAGCCAAGGCTCGGAGCTGGTAGAGGCATCAGCGAAGGAGGAGATGCTGGTGCAAGAGTGCCACACACCCACGTCATCATCAAAAGTGGCTCAAACGTTGTTGGTTTGTCCACCACCTCCGAAGAAACCACGAGTGTCCAGAAGGACTTCTCATTCTCATTCTCAAGCTGGCTTCTTTCAAGTGCCCCACGATGATCTCGCTTCTGTCTTTCTGCTTCGGACCAAACCTTCCGTTCCGAGGAAGCTCTTTGCTAGCTAG
>Glyma17g06440.3 sequence type=CDS gene model=Glyma17g06440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTCTCGAAATCCTAGACGAATTTCGGCCAATTATGCCCATCCGAACAGTTCCTGTTCCTAAGGTTAGAACCTTCAGCCAAGGCTCGGAGCTGGTAGAGGCATCAGCGAAGGAGGAGATGCTGGTGCAAGAGTGCCACACACCCACGTCATCATCAAAAGTGGCTCAAACGTTGTTGGTTTGTCCACCACCTCCGAAGAAACCACGAGTGTCCAGAAGGACTTCTCATTCTCATTCTCAAGCTGGCTTCTTTCAAGTGCCCCACGATGATCTCGCTTCTGTCTTTCTGCTTCGGACCAAACCTTCCGTTCCGAGGAAGCTCTTTGCTAGCTAG
Predicted protein sequences of Glyma17g06440
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g06440.2 sequence type=predicted peptide gene model=Glyma17g06440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGLEILDEFRPIMPIRTVPVPKVRTFSQGSELVEASAKEEMLVQECHTPTSSSKVAQTLLVCPPPPKKPRVSRRTSHSHSQAGFFQVPHDDLASVFLLRTKPSVPRKLFAS*
>Glyma17g06440.3 sequence type=predicted peptide gene model=Glyma17g06440 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGLEILDEFRPIMPIRTVPVPKVRTFSQGSELVEASAKEEMLVQECHTPTSSSKVAQTLLVCPPPPKKPRVSRRTSHSHSQAGFFQVPHDDLASVFLLRTKPSVPRKLFAS*