Glyma17g06430 - SoyBase

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Report for Sequence Feature Glyma17g06430

Feature Type:	gene_model
Chromosome:	Gm17
Start:	4578112
stop:	4582312
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g06430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G17220	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr2:7487866-7489768 REVERSE LENGTH=413	SoyBase	E_val: 1.00E-143	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006995	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0045087	GO-bp	Annotation by Michelle Graham. GO Biological Process: innate immune response	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF531	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7JT87	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase 2B n=1 Tax=Medicago truncatula RepID=G7JT87_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MSJ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSJ3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g06430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g06430 not represented in the dataset	Glyma17g06430 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g06430

Paralog	Evidence	Comments
Glyma13g00370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g06430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g056900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g06430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g06430

Limit To All Plant Sequences

>Glyma17g06430.2   sequence type=transcript   gene model=Glyma17g06430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGTACTCTTTGCACTTCTGTCACTATAAACCAAGTCAGATACGCCTCTCAGCATTTCTTTCCCTGCTTTTCTGCTTAGGTAAATGCAGAAACAATTCAATGGGGAATTGTTGGAGTCTTCAATCAGGTTCTCCAGGCGATCATCCCAACTCCAATACTGCCCCCAACCTCAACAATCAATCAGGGAATATTCAATTTTCTGCTGGTCTAAGCAACACAAGATTAACACAGAATGGCAATTCTACTTCTCTTGGGCGTAGCAGCCACTCTGGAGGAATCAGCAGCAGGTTCTTTGGGCCAAGTAGTAGTAATAACTACTCAACTGGAAATAACACTAGCACATCCCTTTGGGGAGGCTCTGAGACTAGCCAAGCCTCTCGAGTTAGAGATGAAGAGGAGTTTCCTCAAGGGCAGATCTTGGATAATGTTGACTTGAGAGCATTTACTTTGGCAGAATTGAAGGCAGCCACCAAAAATTTCAGAGCTGAGACTGTGATAGGAGAGGGGGGGTTTGGTAAAGTATACAAGGGCTTGATTGATGATAGAGCAGCAAAAAAAAGAGGTGAGGGGTTGACTGTTGCCATCAAGAAATTGAATTCTGAAAGCACCCAAGGAATTGAGGAATGGCAGTCAGAGGTGAATTTCTTAGGGAGGCTTTCTCACCCCAACCTTGTTAAGTTGTTGGGATTTGGGCTAGAGGATACTGAACTGTTCCTGGTGTATGAATTTATGCATCGTGGCAGCTTGGATAACCACCTATATGGAAGAGGTGCAAATGTTCGGTCACTTTCTTGGGATACAAGGCTAAAGACTATGATTGGAACAGCTAGGGGACTGAATTTCCTTCACTCCTTGGAGAAGAAAATTATATATAGAGATGTCAAACCCTCAAATATACTACTTGACAAGCATTATACAGTCAAGTTATCAGACTTTGGCTTAGCTAAATCTGTGAATTCGCCTGATCATAGTCACATATCAACACGGGTTGTGGGGACACATGGCTACGCTGCTCCTGAGTACGTTGCAACAGGTCGTTTGTACGTGAAAAGTGATGTGTATGGATTTGGAATTGTTTTGGTGGAGGTGCTGACGGGCAAGAGGATAAGGGATATATTGGACCAGTGTCAGAAAATGTCCTTGAGAGATTGGCTCAAAACAAATCTATTAAGTAGAGCAAAAATAAGAAGCACCATGGATGCAAAGTTAGAAGGAAGGTATCCAAACAATTTAGCTTTACAATTAGCTGAACTAGCTCTCAAATGCATCCAAACAGATCCCAAAGTCAGGCCATCAATGAATGAAGTTGTTGAAACATTGGAACAGATTGAAGCAGCCAATGAGAAACCAGCTGATAACAGAAGACGGGTTACTCGTACCCGGGTAGTTCAACAACATGGAGGGCCTGATGGTGGTTAATTGAATTAAACACATCTACACCATATTCTTTGCAGCTGATGGATTGTGGACTTGAAGAGCTTATTGCTCTAGTGGCCTAGGGGGGTTGAGCTTGTATAGTATAACATACACATATATGAAAAGGATCAGGGTTGAGCCTGTGACATTTGGCTTTATGTGCACCCCAAAGCTAGGAGAAAGAGACTTCAAACTAGGTCGTCCCCAGGCATTGATAAGCAAGCAGAGACTAGTCTTCGGAATGCAGTCAATTGTCTTCCACACATTGTTCCATTCCAGAAACTAGTTTCCAGAATGCACATCTCCAGCAACACACTTAGGTAGTCCAACCCTGCCTATATGTTAAAAGACAGGGTGCACTTCTTCCTCACATTGCAGATTCGCCCCAAACACACGCACACCATAATTTCACATACAATTATCGTAACATATTATTTTCTTGGATCAATTTTTTTATTATGGACAATTCCAACGTATGACCCGTAGCGGAGAGGAGCAAAAATTCAGTAGTTTGACCTCCTATATGCATTCATTCCCCACAGATTTCATGGAGTCTGGCGAAAAATTGCAACACAATATGAATGCCATATATAAGCAATTAATGGAGAAAGAGCAAAGAAGAAATCAATATCACAATGAAAGAGAGAAGAGAGAAAACCAAACAAACAAGGTAATCCGGACAAATTAATCACCAACACAAGCATAATTGAAATTATCAACGAAGCTTAACAACTTCCTCCCCCACCTTAATTGAAATAAGAACTTTTTCCTCCTTCCACTGCACTGCCACAACGTCTACACGGTGTTCCCACACTCACGTCAACAATGTACATGGTGGTGCAAAATGTAGGGAAATGAGAGGGACAGTGATTGAATATGACTTTTAACTGATCAGAAATAAATAATCTATTTTTATAATTATTATAAAAATTAACAAATGTAATATATTTGATAATTTGTGATTGAAT

Coding sequences of Glyma17g06430

Limit To All Plant Sequences

>Glyma17g06430.1   sequence type=CDS   gene model=Glyma17g06430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAATTGTTGGAGTCTTCAATCAGGTTCTCCAGGCGATCATCCCAACTCCAATACTGCCCCCAACCTCAACAATCAATCAGGGAATATTCAATTTTCTGCTGGTCTAAGCAACACAAGATTAACACAGAATGGCAATTCTACTTCTCTTGGGCGTAGCAGCCACTCTGGAGGAATCAGCAGCAGGTTCTTTGGGCCAAGTAGTAGTAATAACTACTCAACTGGAAATAACACTAGCACATCCCTTTGGGGAGGCTCTGAGACTAGCCAAGCCTCTCGAGTTAGAGATGAAGAGGAGTTTCCTCAAGGGCAGATCTTGGATAATGTTGACTTGAGAGCATTTACTTTGGCAGAATTGAAGGCAGCCACCAAAAATTTCAGAGCTGAGACTGTGATAGGAGAGGGGGGGTTTGGTAAAGTATACAAGGGCTTGATTGATGATAGAGCAGCAAAAAAAAGAGGTGAGGGGTTGACTGTTGCCATCAAGAAATTGAATTCTGAAAGCACCCAAGGAATTGAGGAATGGCAGTCAGAGGTGAATTTCTTAGGGAGGCTTTCTCACCCCAACCTTGTTAAGTTGTTGGGATTTGGGCTAGAGGATACTGAACTGTTCCTGGTGTATGAATTTATGCATCGTGGCAGCTTGGATAACCACCTATATGGAAGAGGTGCAAATGTTCGGTCACTTTCTTGGGATACAAGGCTAAAGACTATGATTGGAACAGCTAGGGGACTGAATTTCCTTCACTCCTTGGAGAAGAAAATTATATATAGAGATGTCAAACCCTCAAATATACTACTTGACAAGCATTATACAGTCAAGTTATCAGACTTTGGCTTAGCTAAATCTGTGAATTCGCCTGATCATAGTCACATATCAACACGGGTTGTGGGGACACATGGCTACGCTGCTCCTGAGTACGTTGCAACAGGTCGTTTGTACGTGAAAAGTGATGTGTATGGATTTGGAATTGTTTTGGTGGAGGTGCTGACGGGCAAGAGGATAAGGGATATATTGGACCAGTGTCAGAAAATGTCCTTGAGAGATTGGCTCAAAACAAATCTATTAAGTAGAGCAAAAATAAGAAGCACCATGGATGCAAAGTTAGAAGGAAGGTATCCAAACAATTTAGCTTTACAATTAGCTGAACTAGCTCTCAAATGCATCCAAACAGATCCCAAAGTCAGGCCATCAATGAATGAAGTTGTTGAAACATTGGAACAGATTGAAGCAGCCAATGAGAAACCAGCTGATAACAGAAGACGGGTTACTCGTACCCGGGTAGTTCAACAACATGGAGGGCCTGATGGTGGTTAA

>Glyma17g06430.2   sequence type=CDS   gene model=Glyma17g06430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAATTGTTGGAGTCTTCAATCAGGTTCTCCAGGCGATCATCCCAACTCCAATACTGCCCCCAACCTCAACAATCAATCAGGGAATATTCAATTTTCTGCTGGTCTAAGCAACACAAGATTAACACAGAATGGCAATTCTACTTCTCTTGGGCGTAGCAGCCACTCTGGAGGAATCAGCAGCAGGTTCTTTGGGCCAAGTAGTAGTAATAACTACTCAACTGGAAATAACACTAGCACATCCCTTTGGGGAGGCTCTGAGACTAGCCAAGCCTCTCGAGTTAGAGATGAAGAGGAGTTTCCTCAAGGGCAGATCTTGGATAATGTTGACTTGAGAGCATTTACTTTGGCAGAATTGAAGGCAGCCACCAAAAATTTCAGAGCTGAGACTGTGATAGGAGAGGGGGGGTTTGGTAAAGTATACAAGGGCTTGATTGATGATAGAGCAGCAAAAAAAAGAGGTGAGGGGTTGACTGTTGCCATCAAGAAATTGAATTCTGAAAGCACCCAAGGAATTGAGGAATGGCAGTCAGAGGTGAATTTCTTAGGGAGGCTTTCTCACCCCAACCTTGTTAAGTTGTTGGGATTTGGGCTAGAGGATACTGAACTGTTCCTGGTGTATGAATTTATGCATCGTGGCAGCTTGGATAACCACCTATATGGAAGAGGTGCAAATGTTCGGTCACTTTCTTGGGATACAAGGCTAAAGACTATGATTGGAACAGCTAGGGGACTGAATTTCCTTCACTCCTTGGAGAAGAAAATTATATATAGAGATGTCAAACCCTCAAATATACTACTTGACAAGCATTATACAGTCAAGTTATCAGACTTTGGCTTAGCTAAATCTGTGAATTCGCCTGATCATAGTCACATATCAACACGGGTTGTGGGGACACATGGCTACGCTGCTCCTGAGTACGTTGCAACAGGTCGTTTGTACGTGAAAAGTGATGTGTATGGATTTGGAATTGTTTTGGTGGAGGTGCTGACGGGCAAGAGGATAAGGGATATATTGGACCAGTGTCAGAAAATGTCCTTGAGAGATTGGCTCAAAACAAATCTATTAAGTAGAGCAAAAATAAGAAGCACCATGGATGCAAAGTTAGAAGGAAGGTATCCAAACAATTTAGCTTTACAATTAGCTGAACTAGCTCTCAAATGCATCCAAACAGATCCCAAAGTCAGGCCATCAATGAATGAAGTTGTTGAAACATTGGAACAGATTGAAGCAGCCAATGAGAAACCAGCTGATAACAGAAGACGGGTTACTCGTACCCGGGTAGTTCAACAACATGGAGGGCCTGATGGTGGTTAA

Predicted protein sequences of Glyma17g06430

Limit To All Plant Sequences

>Glyma17g06430.1   sequence type=predicted peptide   gene model=Glyma17g06430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNCWSLQSGSPGDHPNSNTAPNLNNQSGNIQFSAGLSNTRLTQNGNSTSLGRSSHSGGISSRFFGPSSSNNYSTGNNTSTSLWGGSETSQASRVRDEEEFPQGQILDNVDLRAFTLAELKAATKNFRAETVIGEGGFGKVYKGLIDDRAAKKRGEGLTVAIKKLNSESTQGIEEWQSEVNFLGRLSHPNLVKLLGFGLEDTELFLVYEFMHRGSLDNHLYGRGANVRSLSWDTRLKTMIGTARGLNFLHSLEKKIIYRDVKPSNILLDKHYTVKLSDFGLAKSVNSPDHSHISTRVVGTHGYAAPEYVATGRLYVKSDVYGFGIVLVEVLTGKRIRDILDQCQKMSLRDWLKTNLLSRAKIRSTMDAKLEGRYPNNLALQLAELALKCIQTDPKVRPSMNEVVETLEQIEAANEKPADNRRRVTRTRVVQQHGGPDGG*

>Glyma17g06430.2   sequence type=predicted peptide   gene model=Glyma17g06430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNCWSLQSGSPGDHPNSNTAPNLNNQSGNIQFSAGLSNTRLTQNGNSTSLGRSSHSGGISSRFFGPSSSNNYSTGNNTSTSLWGGSETSQASRVRDEEEFPQGQILDNVDLRAFTLAELKAATKNFRAETVIGEGGFGKVYKGLIDDRAAKKRGEGLTVAIKKLNSESTQGIEEWQSEVNFLGRLSHPNLVKLLGFGLEDTELFLVYEFMHRGSLDNHLYGRGANVRSLSWDTRLKTMIGTARGLNFLHSLEKKIIYRDVKPSNILLDKHYTVKLSDFGLAKSVNSPDHSHISTRVVGTHGYAAPEYVATGRLYVKSDVYGFGIVLVEVLTGKRIRDILDQCQKMSLRDWLKTNLLSRAKIRSTMDAKLEGRYPNNLALQLAELALKCIQTDPKVRPSMNEVVETLEQIEAANEKPADNRRRVTRTRVVQQHGGPDGG*

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