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Report for Sequence Feature Glyma17g06290

Feature Type:gene_model
Chromosome:Gm17
Start:4473612
stop:4475846
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g06290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G26150AT Annotation by Michelle Graham. TAIR10: cytokinin-responsive gata factor 1 | chr4:13253210-13254659 FORWARD LENGTH=352 SoyBaseE_val: 3.00E-37ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009735GO-bp Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus SoyBaseN/AISS
GO:0009740GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0009910GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development SoyBaseN/AISS
GO:0010187GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of seed germination SoyBaseN/AISS
GO:0010380GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chlorophyll biosynthetic process SoyBaseN/AISS
GO:0010468GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of gene expression SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
GO:0044212GO-mf Annotation by Michelle Graham. GO Molecular Function: transcription regulatory region DNA binding SoyBaseN/AISS
PTHR10071Panther TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR) JGI ISS
PF00320PFAM GATA zinc finger JGI ISS
UniRef100_G7IIE3UniRef Annotation by Michelle Graham. Most informative UniRef hit: GATA transcription factor n=1 Tax=Medicago truncatula RepID=G7IIE3_MEDTR SoyBaseE_val: 2.00E-58ISS
UniRef100_I1MSH4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSH4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g06290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g06290
ParalogEvidenceComments
Glyma13g00200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g06290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g055200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g06290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g06290
>Glyma17g06290.1   sequence type=CDS   gene model=Glyma17g06290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCCAGCCTATCGCCACTCAGTATCTTCTGTTATGCCTCTGGATCTTAATGAAGATCAAAACCACGAGTTCTTCAGTCCAACTCACCACCCTTCCTCTTCGTTTTCTTCTCTATCTTCATATCCTATTCTCTTCAACCCGCCAAATCAAGATCAAGAAGCTCGATCATACTACTGGGAACCAACAAAGCAGTACTTACCAAGTCATGAAGAAGAGACTGAGAAGATTATTCCTTCTAGCGGATCATGGGATCACTCGGTGGCAGAAAGTGAGCACAATAAGGCGACAGTTTGGAAGAAAGCAGAAGAGAGGAATGAAAATCTTGAATCAGTTGCTGCTGAAGATGGTTCGTTGAAGTGGATGCCTGCCAAGATGAGAATTATGCGGAAGATGTTGGTGTCGGATCAAACTGATACATATACTAATTCAGACAACAACACTACGCACAAGTTTGATGATCAGAAACAACAACTGTCGTCACCGCTTGGAACTGATAACAGCAGCAGCAACAACTATTCAAACCACAGTAACAACACTGTTAGGGTTTGTTCTGATTGCCACACCACCAAGACTCCTCTATGGAGGAGTGGACCAAGAGGCCCCAAGTCACTTTGCAACGCCTGTGGGATTCGACAAAGGAAGGCAAGACGAGCCATGGCAGCTGCTGCGGCTTCTGCATCGGGAAATGGAACAGTAATTGTGGAAGCTAAGAAATCTGTGAAGGGACGGAACAAGTTGCAGAAGAAGAAAGAGAAGAAGACAAGAACTGAGGGTGCAGCACAGATGAAAAAGAAGCGGAAGCTTGGAGTTGGATCAGCAAAGGCATCTCAAAGTAGAAACAAGTTTGGTTTTGAGGATTTGACGTTGCGCTTGAGAAAGAACTTGGCTATGCATCAAGTTTTCCCTCAGGACGAGAAGGAGGCTGCGATCCTTCTCATGGCTTTATCTTATGGCCTTGTTCATTGA
Predicted protein sequences of Glyma17g06290
>Glyma17g06290.1   sequence type=predicted peptide   gene model=Glyma17g06290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIPAYRHSVSSVMPLDLNEDQNHEFFSPTHHPSSSFSSLSSYPILFNPPNQDQEARSYYWEPTKQYLPSHEEETEKIIPSSGSWDHSVAESEHNKATVWKKAEERNENLESVAAEDGSLKWMPAKMRIMRKMLVSDQTDTYTNSDNNTTHKFDDQKQQLSSPLGTDNSSSNNYSNHSNNTVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAASASGNGTVIVEAKKSVKGRNKLQKKKEKKTRTEGAAQMKKKRKLGVGSAKASQSRNKFGFEDLTLRLRKNLAMHQVFPQDEKEAAILLMALSYGLVH*






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