Glyma17g06280 - SoyBase

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Report for Sequence Feature Glyma17g06280

Feature Type:	gene_model
Chromosome:	Gm17
Start:	4454597
stop:	4460302
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g06280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13750	AT	Annotation by Michelle Graham. TAIR10: beta galactosidase 1 \| chr3:4511192-4515756 FORWARD LENGTH=847	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0032880	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein localization	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0004565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-galactosidase activity	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
KOG0496	KOG	Beta-galactosidase	JGI		ISS
PTHR23421	Panther	BETA-GALACTOSIDASE RELATED	JGI		ISS
PTHR23421:SF33	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01301	PFAM	Glycosyl hydrolases family 35	JGI		ISS
PF02140	PFAM	Galactose binding lectin domain	JGI		ISS
UniRef100_B9HDL7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-galactosidase n=1 Tax=Populus trichocarpa RepID=B9HDL7_POPTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E0D9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E0D9 related cluster n=1 Tax=unknown RepID=UPI000233E0D9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g06280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g06280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g055100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g06280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g06280

Limit To All Plant Sequences

>Glyma17g06280.1   sequence type=CDS   gene model=Glyma17g06280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCACGGGTTCTAATCGAGAATTTACCAAGGGGGAATTTTTGTACCCTGCTGTTAGTTTTGTGGGTTTGTGCAGTCACAGCCTCTGTGACTTATGATCACAAAGCCATTGTTGTTAATGGCCAGAGAAGAATTTTGATCTCTGGTTCCATTCACTACCCAAGAAGCACACCTGAGATGTGGCCAGACCTTATTCAAAAGGCCAAAGATGGAGGCTTAGATGTTATCCAAACCTATGTGTTTTGGAATGGACATGAGCCTTCTCCCGGAAAGTATTATTTCGAGGATAGGTACGACTTGGTTAAGTTCATCAAGCTGGTACAGCAAGCTGGTCTCTATGTTCATCTCCGCATTGGTCCCTACATATGTGCTGAATGGAACTTTGGGGGGTTTCCTGTTTGGCTCAAGTATGTTCCGGGTATTGCTTTCAGAACAGACAATGAACCTTTCAAGGCTGCAATGCAAAAATTTACTGAGAAGATTGTCAGCATTATGAAGGAGGAGAAATTGTTCCAGACGCAGGGAGGTCCGATAATTATGTCACAGATAGAAAACGAATATGGACCAGTGGAGTGGGAAATTGGTGCCCCTGGGAAAGCTTATACCAAATGGTTTTCTCAAATGGCTGTGGGTTTAGATACTGGTGTCCCCTGGATTATGTGCAAGCAACAAGATACTCCGGATCCTCTTATTGACACCTGCAATGGATACTACTGCGAAAACTTTACTCCCAACAAGAAATACAAACCCAAAATGTGGACAGAGAACTGGACTGGCTGGTACACTGAGTTTGGAGGCGCGGTCCCTCGTAGACCTGCAGAAGACATGGCATTCTCAGTTGCAAGATTCGTACAGAATGGTGGTTCATTTGTTAATTACTATATGTACCATGGAGGAACTAACTTTGATCGGACATCCAGTGGCCTCTTCATTGCCACCAGCTATGACTATGACGGTCCTATTGATGAATACGGACTTCTAAATGAACCAAAATGGGGGCATCTTAGAGATTTGCATAAAGCAATAAAGCTATGTGAGCCAGCTTTAGTGTCTGTAGATCCAACAGTGACATGGCCAGGAAATAACCTTGAGGTACATGTGTTCAAGACTTCTGGTGCTTGTGCTGCATTCCTTGCAAACTATGACACCAAATCTTCCGCATCAGTTAAATTTGGAAATGGACAATATGACCTACCACCATGGTCTATCAGCATCCTTCCTGATTGCAAAACTGCAGTTTTCAACACTGCGAGGCTTGGTGCTCAAAGCTCTCTGATGAAGATGACTGCCGTGAACAGTGCATTTGATTGGCAGTCATACAATGAAGAGCCTGCATCATCCAATGAGGATGATTCTTTGACAGCATATGCACTCTGGGAGCAGATTAATGTCACCCGAGATTCTACAGATTATTTGTGGTATATGACAGATGTCAACATTGATGCAAATGAAGGTTTTATAAAGAATGGACAATCTCCTGTTCTTACCGTAATGTCAGCAGGCCATGTTTTGCATGTTTTAATTAATGATCAACTTTCAGGTACCGTGTACGGGGGACTGGACTCTCATAAGTTAACATTTAGTGACAGTGTTAAGCTGAGGGTTGGCAATAACAAGATTTCTTTACTAAGTATTGCCGTGGGTCTCCCGAATGTTGGGCCACACTTTGAGACATGGAATGCTGGGGTGTTAGGTCCAGTCACACTTAAGGGTCTAAATGAGGGGACTAGAGACTTGTCTAAACAGAAATGGTCTTACAAGATTGGTCTCAAGGGTGAAGCCTTAAACCTTAACACTGTCAGTGGTAGTTCCTCCGTGGAATGGGTACAAGGATCATTATTGGCTAAACAGCAACCTTTGGCATGGTACAAGACAACTTTTAGCACACCAGCAGGCAACGATCCGTTAGCTCTGGACATGATTAGCATGGGAAAGGGTCAGGCATGGATAAACGGTCGAAGCATTGGACGCCATTGGCCTGGATATATAGCACGCGGTAACTGTGGGGATTGTTATTATGCTGGAACTTACACTGATAAAAAATGCCGGACAAATTGTGGAGAACCCTCCCAGAGATGGTACCATATTCCTCGGTCGTGGCTGAACCCAAGTGGGAACTATCTGGTTGTGTTTGAAGAATGGGGAGGTGATCCTACTGGAATTACTTTGGTGAAAAGAACAACAGCAAGTGTGTGTGCTGATATATACCAAGGGCAACCAACTCTTAAGAACAGACAGATGCTAGACTCTGGCAAAGTTGTTAGACCCAAGGCTCACTTGTGGTGTCCACCTGGGAAAAACATCTCTCAGATTAAATTTGCTAGTTATGGATTGCCACAGGGAACTTGTGGAAACTTTAGAGAAGGAAGTTGTCATGCTCACAAATCATATGATGCTCCTCAAAAGAACTGCATTGGCAAGCAATCTTGCTTGGTGACTGTAGCTCCTGAAGTTTTTGGGGGAGACCCGTGTCCGGGAATTGCAAAGAAGCTCTCACTTGAAGCACTATGCGGATAA

Predicted protein sequences of Glyma17g06280

Limit To All Plant Sequences

>Glyma17g06280.1   sequence type=predicted peptide   gene model=Glyma17g06280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSRVLIENLPRGNFCTLLLVLWVCAVTASVTYDHKAIVVNGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEDRYDLVKFIKLVQQAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIAFRTDNEPFKAAMQKFTEKIVSIMKEEKLFQTQGGPIIMSQIENEYGPVEWEIGAPGKAYTKWFSQMAVGLDTGVPWIMCKQQDTPDPLIDTCNGYYCENFTPNKKYKPKMWTENWTGWYTEFGGAVPRRPAEDMAFSVARFVQNGGSFVNYYMYHGGTNFDRTSSGLFIATSYDYDGPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVTWPGNNLEVHVFKTSGACAAFLANYDTKSSASVKFGNGQYDLPPWSISILPDCKTAVFNTARLGAQSSLMKMTAVNSAFDWQSYNEEPASSNEDDSLTAYALWEQINVTRDSTDYLWYMTDVNIDANEGFIKNGQSPVLTVMSAGHVLHVLINDQLSGTVYGGLDSHKLTFSDSVKLRVGNNKISLLSIAVGLPNVGPHFETWNAGVLGPVTLKGLNEGTRDLSKQKWSYKIGLKGEALNLNTVSGSSSVEWVQGSLLAKQQPLAWYKTTFSTPAGNDPLALDMISMGKGQAWINGRSIGRHWPGYIARGNCGDCYYAGTYTDKKCRTNCGEPSQRWYHIPRSWLNPSGNYLVVFEEWGGDPTGITLVKRTTASVCADIYQGQPTLKNRQMLDSGKVVRPKAHLWCPPGKNISQIKFASYGLPQGTCGNFREGSCHAHKSYDAPQKNCIGKQSCLVTVAPEVFGGDPCPGIAKKLSLEALCG*

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