Report for Sequence Feature Glyma17g06280
Feature Type: gene_model
Chromosome: Gm17
Start: 4454597
stop: 4460302
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g06280
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G13750 AT
Annotation by Michelle Graham. TAIR10: beta galactosidase 1 | chr3:4511192-4515756 FORWARD LENGTH=847
SoyBase E_val: 0 ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0032880 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of protein localization
SoyBase N/A ISS
GO:0042744 GO-bp
Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process
SoyBase N/A ISS
GO:0048767 GO-bp
Annotation by Michelle Graham. GO Biological Process: root hair elongation
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0005618 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cell wall
SoyBase N/A ISS
GO:0009505 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004553 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds
SoyBase N/A ISS
GO:0004565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: beta-galactosidase activity
SoyBase N/A ISS
GO:0030246 GO-mf
Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding
SoyBase N/A ISS
GO:0043169 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cation binding
SoyBase N/A ISS
KOG0496
KOG
Beta-galactosidase
JGI ISS
PTHR23421 Panther
BETA-GALACTOSIDASE RELATED
JGI ISS
PTHR23421:SF33 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01301 PFAM
Glycosyl hydrolases family 35
JGI ISS
PF02140 PFAM
Galactose binding lectin domain
JGI ISS
UniRef100_B9HDL7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Beta-galactosidase n=1 Tax=Populus trichocarpa RepID=B9HDL7_POPTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233E0D9 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E0D9 related cluster n=1 Tax=unknown RepID=UPI000233E0D9
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g06280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma17g06280 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g055100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g06280
Coding sequences of Glyma17g06280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g06280.1 sequence type=CDS gene model=Glyma17g06280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTTCACGGGTTCTAATCGAGAATTTACCAAGGGGGAATTTTTGTACCCTGCTGTTAGTTTTGTGGGTTTGTGCAGTCACAGCCTCTGTGACTTATGATCACAAAGCCATTGTTGTTAATGGCCAGAGAAGAATTTTGATCTCTGGTTCCATTCACTACCCAAGAAGCACACCTGAGATGTGGCCAGACCTTATTCAAAAGGCCAAAGATGGAGGCTTAGATGTTATCCAAACCTATGTGTTTTGGAATGGACATGAGCCTTCTCCCGGAAAGTATTATTTCGAGGATAGGTACGACTTGGTTAAGTTCATCAAGCTGGTACAGCAAGCTGGTCTCTATGTTCATCTCCGCATTGGTCCCTACATATGTGCTGAATGGAACTTTGGGGGGTTTCCTGTTTGGCTCAAGTATGTTCCGGGTATTGCTTTCAGAACAGACAATGAACCTTTCAAGGCTGCAATGCAAAAATTTACTGAGAAGATTGTCAGCATTATGAAGGAGGAGAAATTGTTCCAGACGCAGGGAGGTCCGATAATTATGTCACAGATAGAAAACGAATATGGACCAGTGGAGTGGGAAATTGGTGCCCCTGGGAAAGCTTATACCAAATGGTTTTCTCAAATGGCTGTGGGTTTAGATACTGGTGTCCCCTGGATTATGTGCAAGCAACAAGATACTCCGGATCCTCTTATTGACACCTGCAATGGATACTACTGCGAAAACTTTACTCCCAACAAGAAATACAAACCCAAAATGTGGACAGAGAACTGGACTGGCTGGTACACTGAGTTTGGAGGCGCGGTCCCTCGTAGACCTGCAGAAGACATGGCATTCTCAGTTGCAAGATTCGTACAGAATGGTGGTTCATTTGTTAATTACTATATGTACCATGGAGGAACTAACTTTGATCGGACATCCAGTGGCCTCTTCATTGCCACCAGCTATGACTATGACGGTCCTATTGATGAATACGGACTTCTAAATGAACCAAAATGGGGGCATCTTAGAGATTTGCATAAAGCAATAAAGCTATGTGAGCCAGCTTTAGTGTCTGTAGATCCAACAGTGACATGGCCAGGAAATAACCTTGAGGTACATGTGTTCAAGACTTCTGGTGCTTGTGCTGCATTCCTTGCAAACTATGACACCAAATCTTCCGCATCAGTTAAATTTGGAAATGGACAATATGACCTACCACCATGGTCTATCAGCATCCTTCCTGATTGCAAAACTGCAGTTTTCAACACTGCGAGGCTTGGTGCTCAAAGCTCTCTGATGAAGATGACTGCCGTGAACAGTGCATTTGATTGGCAGTCATACAATGAAGAGCCTGCATCATCCAATGAGGATGATTCTTTGACAGCATATGCACTCTGGGAGCAGATTAATGTCACCCGAGATTCTACAGATTATTTGTGGTATATGACAGATGTCAACATTGATGCAAATGAAGGTTTTATAAAGAATGGACAATCTCCTGTTCTTACCGTAATGTCAGCAGGCCATGTTTTGCATGTTTTAATTAATGATCAACTTTCAGGTACCGTGTACGGGGGACTGGACTCTCATAAGTTAACATTTAGTGACAGTGTTAAGCTGAGGGTTGGCAATAACAAGATTTCTTTACTAAGTATTGCCGTGGGTCTCCCGAATGTTGGGCCACACTTTGAGACATGGAATGCTGGGGTGTTAGGTCCAGTCACACTTAAGGGTCTAAATGAGGGGACTAGAGACTTGTCTAAACAGAAATGGTCTTACAAGATTGGTCTCAAGGGTGAAGCCTTAAACCTTAACACTGTCAGTGGTAGTTCCTCCGTGGAATGGGTACAAGGATCATTATTGGCTAAACAGCAACCTTTGGCATGGTACAAGACAACTTTTAGCACACCAGCAGGCAACGATCCGTTAGCTCTGGACATGATTAGCATGGGAAAGGGTCAGGCATGGATAAACGGTCGAAGCATTGGACGCCATTGGCCTGGATATATAGCACGCGGTAACTGTGGGGATTGTTATTATGCTGGAACTTACACTGATAAAAAATGCCGGACAAATTGTGGAGAACCCTCCCAGAGATGGTACCATATTCCTCGGTCGTGGCTGAACCCAAGTGGGAACTATCTGGTTGTGTTTGAAGAATGGGGAGGTGATCCTACTGGAATTACTTTGGTGAAAAGAACAACAGCAAGTGTGTGTGCTGATATATACCAAGGGCAACCAACTCTTAAGAACAGACAGATGCTAGACTCTGGCAAAGTTGTTAGACCCAAGGCTCACTTGTGGTGTCCACCTGGGAAAAACATCTCTCAGATTAAATTTGCTAGTTATGGATTGCCACAGGGAACTTGTGGAAACTTTAGAGAAGGAAGTTGTCATGCTCACAAATCATATGATGCTCCTCAAAAGAACTGCATTGGCAAGCAATCTTGCTTGGTGACTGTAGCTCCTGAAGTTTTTGGGGGAGACCCGTGTCCGGGAATTGCAAAGAAGCTCTCACTTGAAGCACTATGCGGATAA
Predicted protein sequences of Glyma17g06280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g06280.1 sequence type=predicted peptide gene model=Glyma17g06280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGSRVLIENLPRGNFCTLLLVLWVCAVTASVTYDHKAIVVNGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEDRYDLVKFIKLVQQAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIAFRTDNEPFKAAMQKFTEKIVSIMKEEKLFQTQGGPIIMSQIENEYGPVEWEIGAPGKAYTKWFSQMAVGLDTGVPWIMCKQQDTPDPLIDTCNGYYCENFTPNKKYKPKMWTENWTGWYTEFGGAVPRRPAEDMAFSVARFVQNGGSFVNYYMYHGGTNFDRTSSGLFIATSYDYDGPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVTWPGNNLEVHVFKTSGACAAFLANYDTKSSASVKFGNGQYDLPPWSISILPDCKTAVFNTARLGAQSSLMKMTAVNSAFDWQSYNEEPASSNEDDSLTAYALWEQINVTRDSTDYLWYMTDVNIDANEGFIKNGQSPVLTVMSAGHVLHVLINDQLSGTVYGGLDSHKLTFSDSVKLRVGNNKISLLSIAVGLPNVGPHFETWNAGVLGPVTLKGLNEGTRDLSKQKWSYKIGLKGEALNLNTVSGSSSVEWVQGSLLAKQQPLAWYKTTFSTPAGNDPLALDMISMGKGQAWINGRSIGRHWPGYIARGNCGDCYYAGTYTDKKCRTNCGEPSQRWYHIPRSWLNPSGNYLVVFEEWGGDPTGITLVKRTTASVCADIYQGQPTLKNRQMLDSGKVVRPKAHLWCPPGKNISQIKFASYGLPQGTCGNFREGSCHAHKSYDAPQKNCIGKQSCLVTVAPEVFGGDPCPGIAKKLSLEALCG*