SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G29720 | AT | Annotation by Michelle Graham. TAIR10: polyamine oxidase 5 | chr4:14553456-14555057 REVERSE LENGTH=533 | SoyBase | E_val: 0 | ISS |
| GO:0007020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule nucleation | SoyBase | N/A | ISS |
| GO:0009736 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0008131 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: primary amine oxidase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG0685 | KOG | Flavin-containing amine oxidase | JGI | ISS | |
| PTHR10742 | Panther | AMINE OXIDASE | JGI | ISS | |
| PTHR10742:SF40 | Panther | gb def: Hypothetical protein T16L4.230 (Hypothetical protein AT4g29720) (Hypothetical pr | JGI | ISS | |
| PF01593 | PFAM | Flavin containing amine oxidoreductase | JGI | ISS | |
| UniRef100_A2Q567 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Amine oxidase n=1 Tax=Medicago truncatula RepID=A2Q567_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E0D8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E0D8 related cluster n=1 Tax=unknown RepID=UPI000233E0D8 | SoyBase | E_val: 0 | ISS |
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Glyma17g06270 not represented in the dataset |
Glyma17g06270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g055000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g06270.1 sequence type=CDS gene model=Glyma17g06270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGCGAAGAAGCCGCTAATTGTGATAATTGGAGCTGGAATGGCAGGGCTCACTGCTGCCAACAAGCTTCACAGTGTGAGTGCCTCAAAGGACTTGTTTGAGGTGTGTGTTGTTGAAGGTGGAAACAGGATTGGTGGGAGAATCAACACATCAGAGTTTGGTGGTGACCGAATTGAGATGGGTGCTACTTGGATCCATGGAATTGGAGGCAGCCCAATTCACAAAATTGCTCAACAAATCCATGCACTTGACTCTGAGCAACCTTGGGAGTGCATGGATGGGAATGAGAATAAGGCCACCACAATTGCTGAAGGTGGCTTTGTGCTAAACCCTTCTTCCCATGTTGACCCCATCACAAAGCTTTTCAACAATCTCATGGATCATGCTCAGAGAAAGATGCCAACAACAACAAAGGGTGACTGTGGAAACCTTAGTGTTGGCTCTTTTCTTAAACAAGGCCTTGATGCTTATTGTGGTTCATCAAAAGAGGAAGAGGAGCTCAAAGGGTTTGGAAAATGGAGCAAAAAGTTACTCGATGAAGCAATCTTTGCAGTTCATGAGAACACACAGAGGACTTACACATCTGCTGCTGATTTGTTCAATCTAGATTATGCAGCAGAAAGTGAATACCAAATGTTTCCAGGTGAGGAAATCACAATTGCTAAAGGCTACTTGAGCATAATTGAATCTTTAGCATCTGTGCTACCTCCTGGTTTGGTTCAGTTGGGTAGAAAAGTCACAAGAATTGAATGGCAGCCGGAGAGACACGAGGCGATGAATTTGGAAAATGGAAGACCATGTTCTTCTAGGCCTGTGATGCTACATTTCTGTGATGGCTCTATTATGTCTGCGGATCATGTCATTGTCACAGTTTCACTTGGAGTGTTGAAGGCTTCTATTCGTGATGATGATTCAGGTATGTTAATGTTTAATCCCCCTTTACCCTCTTTCAAGGCCGAGGCTATTTCAAGGCTTGGTTTTGGTGTTGTTAATAAGTTGTTTATGCAATTGAGTGAGCCTCCACATGAACATTCCAAAGGGTTCCCCTTCTTGCAAATGGTTTTTCATTCACCTCAATCTGAGTTGAGGCACAAGAAAATACCCTGGTGGATGAGGAGGACAGCTACCCTTTGTCCAATTTACAACAATTCTAGTGTCCTCCTATCTTGGTTTGCTGGGGAAGAAGCACTGGCACTTGAGTCACTCAAAGATGAAGAGATCATTGAAGGGGTTTCAGACACAATTTCATGCTTCCTATCGAATTCACTTGAGTTTTGCAACGGGAATGTGAATTCTGAGAAGTATTCTCACGAATATAAGGTGAAATTCAGTAAGGTGTTAAAGAGCAAGTGGGGAACAGATCCATTGTTTTTAGGCTCATACAGTCATGTGGCAGTTGGATCAAGTGGTGATGATTTAGATACAATGGCAGAGCCATTGCCAAAATGCCTCACTTGTGCTTCACCACCACTTCAAATCTTGTTTGCAGGGGAAGCAACTCACAGAACCCATTATTCTACAACTCATGGAGCTTACTTTAGTGGCCTTAGGGAAGCCAATAGGCTTCTTCAACACTATTCACTGTGTTAA
>Glyma17g06270.1 sequence type=predicted peptide gene model=Glyma17g06270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVAKKPLIVIIGAGMAGLTAANKLHSVSASKDLFEVCVVEGGNRIGGRINTSEFGGDRIEMGATWIHGIGGSPIHKIAQQIHALDSEQPWECMDGNENKATTIAEGGFVLNPSSHVDPITKLFNNLMDHAQRKMPTTTKGDCGNLSVGSFLKQGLDAYCGSSKEEEELKGFGKWSKKLLDEAIFAVHENTQRTYTSAADLFNLDYAAESEYQMFPGEEITIAKGYLSIIESLASVLPPGLVQLGRKVTRIEWQPERHEAMNLENGRPCSSRPVMLHFCDGSIMSADHVIVTVSLGVLKASIRDDDSGMLMFNPPLPSFKAEAISRLGFGVVNKLFMQLSEPPHEHSKGFPFLQMVFHSPQSELRHKKIPWWMRRTATLCPIYNNSSVLLSWFAGEEALALESLKDEEIIEGVSDTISCFLSNSLEFCNGNVNSEKYSHEYKVKFSKVLKSKWGTDPLFLGSYSHVAVGSSGDDLDTMAEPLPKCLTCASPPLQILFAGEATHRTHYSTTHGAYFSGLREANRLLQHYSLC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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