Glyma17g06260 - SoyBase

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Report for Sequence Feature Glyma17g06260

Feature Type:	gene_model
Chromosome:	Gm17
Start:	4442652
stop:	4445027
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g06260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G29735	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0197 (InterPro:IPR007915); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr4:14562962-1	SoyBase	E_val: 3.00E-26	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4452	KOG	Predicted membrane protein	JGI		ISS
PTHR13636	Panther	UNCHARACTERIZED	JGI		ISS
PF05251	PFAM	Uncharacterised protein family (UPF0197)	JGI		ISS
UniRef100_E3TFJ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nef1 n=1 Tax=Ictalurus punctatus RepID=E3TFJ8_ICTPU	SoyBase	E_val: 2.00E-15	ISS
UniRef100_I1MSH1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSH1_SOYBN	SoyBase	E_val: 2.00E-44	ISS

Expression Patterns of Glyma17g06260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g06260 not represented in the dataset	Glyma17g06260 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g06260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g054900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g06260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g06260

Limit To All Plant Sequences

>Glyma17g06260.1   sequence type=CDS   gene model=Glyma17g06260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCAAAACCGATAACGAGTCCCGTCCCCGATTCGTGGTACCCCACACTCTCCGTCTTCACTCTCGCCATCGGCCTCGTCTTAACCGCCTCTTTCTTCATTTATGAAGCAACATCTTCTAGGAAAAGTCGTTCACTTGTTCAGGAGCTGACAACTGGAGCAGTGGCTTCAGTCTTCTTGGGTTTTGGGTCCCTGTTCCTCCTACTTGCTTCTGGCGTTTATGTCTAA

Predicted protein sequences of Glyma17g06260

Limit To All Plant Sequences

>Glyma17g06260.1   sequence type=predicted peptide   gene model=Glyma17g06260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPKPITSPVPDSWYPTLSVFTLAIGLVLTASFFIYEATSSRKSRSLVQELTTGAVASVFLGFGSLFLLLASGVYV*

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