SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G29750 | AT | Annotation by Michelle Graham. TAIR10: CRS1 / YhbY (CRM) domain-containing protein | chr4:14569728-14572962 FORWARD LENGTH=841 | SoyBase | E_val: 0 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| KOG1990 | KOG | Poly(A)-specific exoribonuclease PARN | JGI | ISS | |
| PF01985 | PFAM | CRS1 / YhbY (CRM) domain | JGI | ISS | |
| UniRef100_F4JNR2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CRS1 / YhbY (CRM) domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4JNR2_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E0D5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E0D5 related cluster n=1 Tax=unknown RepID=UPI000233E0D5 | SoyBase | E_val: 0 | ISS |
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Glyma17g06210 not represented in the dataset |
Glyma17g06210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g054400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g06210.2 sequence type=transcript gene model=Glyma17g06210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAAACTCTAACTGGGGGGAGTGTATCTCTGAAAAGTTGAGAAGTGAAGTGAAGTAGAGAGAGGTTTTATGCGATTCCATGAATTGATAGAGTGAACAATTTATCATGCCATGGCGCTTCAACCAATTCCATTAAATTGTTCTTCTTCCACACCGTGTAGCTATTCTTCTCTGCATTTTCTCAAATTCAGAGTTTCTTGTTCGAACCAGACATCGCAACTTGACACTCCACAACGAGTGAAGGTAGCGAACAAGACAAAAAACAGCAGCCACAGGCCAAGCTTCCTTCATCAAATTCAAGATAAATGGTCACTCAAATTAGGGTCCCAAAGGGAAAAATTCCCATGGCAAGAACAAAAACACGAGGTGGAACAACAACAGCAGATAGAAGAAGAAAAAGAAGAAAAAAAGCGTGAGCAGTTCCAGAATCAGAAGAAGCCTTCAGCATCGAATTTTCAGTTTCCAAAGCGAGTTTCGCCTTGGGCGCAGGCAATAAACCCGAGCAGTGCACTGTTAGACTCTGAATCCGATGATTCCGAGGACGAGGAGGACAATGAAGATGTCAAAGGTAAAGCGTTGCAACACAACTCTATTGGTTCTGTTCGTGAAGAAAGAAAGGGAATGGCGAGTGAGGTTTCTTCGAATGAAGCAGAAAGAGTAAATGGGGAGAGGAAAAAGAGAAGAAGCAATACAGAGTTGGCAGAGAGGACGATTCCTGAACATGAGTTGCGGAGGCTGAGAAAGATTGCCTTGAGGATGATGGAGAGATTTGATGTTGGAGTAAAAGGCATCACGCAGGAACTGGTAGCTTCAGTTCACCAAAAGTGGAGAGATGCTGAAGTTGTTAAGTTCAAGTTTGGCATTCCTCTTTCTGCTCACATGAAAAAGGCTCATCAAATTCTAGAGAGTAAAATTGGAGGCATAGTGATATGGCGATCGGGCAGTTCCATAGTGTTGTATCGGGGAATGGCCTACAAGCTTCCCTGCATAGAAAATTATAAGAAAGTGAATCTTGCTAAGGAGAATGCTGTGGATCACTCACTACATGTTGGAAATGGAAGTGATGGTCAAGCGAGTGTTAACGAAACAGTTGGAACTGCAGAGTCGGTCATCCAAGAATCTGCTGAGTATTTGAAGGACATGAGTGAAGAAGAATTGATGGAAATGTGTGACCTCAACCATTTGTTAGATGAATTGGGTCCACGTTTCAAAGATTGGACAGGCCGTCAACCATTGCCTGTTGATGCAGACTTGTTGCCAGCTGTGGTTCCAGGATATAAAACCCCATTCAGACTTCTTCCTTATCGGATAAGGCCTTGTTTAACCAACAAGGAAATGACTAACTTCCGTAGGCTTGCAAGAACAACAGCTCCACATTTTGCCCTTGGCAGAAACAGAGAATTGCAAGGTCTGGCTCGTGCTATGGTGAAACTGTGGGAAACAAGTGCTATTGCAAAAATTGCCATCAAACGAGGTGTTCCTAATACATGTAATGACAGGATGGCTGAAGAACTCAGGAAATTGACTGGGGGAACTCTACTTTCCAGAAATAAAGAATATATTGTATTTTACAGAGGCAATGACTTCTTGCCTCCTGTTGTTACCAACACTCTGAATGAGAGACAGAAACTAACCCTCCTTCAACAAGATGAGGAAGACAAAGCACGACAAATTGCCTCATCTATTACTGTATCAAATAGCAAAGCAGCTCAAGTGCCATTAATTGCTGGCACCCTTACTGAGACTAGGGCAGCAACCACCAACTGGGGACACCAACCAAGTAAACAAGAAATTGAGAACATGATCAGAGATTCTGCCATGAATAAACTTTCTGCTTTAGTAAAACACCATGAGAAGAAACTAGCTCTAGCAAAATCAAAATTCAGGAAGGCTGAGAAGGCTTTAGCAAAAGTTCAGCGTGATCTGGACCCAGCTGATATTCCTAGTGATTTGGAAACATTAACTAATGAAGAGAGATTCTTATTTAGGAAGATTGGTCTGAGTATGAAGCCATACTTACTTCTAGGGAGGCGAGATGTTTATGCTGGCACAATAGAAAACATGCATCTACACTGGAAATATCGTGAATTGGTAAAGTTAATTGTAAAAGGGAGAAATTCAGCCCAAGTCAAGCATATCTCAATATCTTTGGAAGCTGAGAGTGGTGGAGTGCTAGTGTCTGTAGATAAGGACACCAGAGGCCATCATACAATTATTGTTTATCGTGGGAAGAACTATTTCAGCCCGCGTGTCGTGAGACCCAAAAACTTGTTGACACGAAGACAGGCATTGGCTCGATCTGTTGAGCTTCAAAGGCGAGAGGTAATATAAAATATGACTTGT
>Glyma17g06210.1 sequence type=CDS gene model=Glyma17g06210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCTTCAACCAATTCCATTAAATTGTTCTTCTTCCACACCGTGTAGCTATTCTTCTCTGCATTTTCTCAAATTCAGAGTTTCTTGTTCGAACCAGACATCGCAACTTGACACTCCACAACGAGTGAAGGTAGCGAACAAGACAAAAAACAGCAGCCACAGGCCAAGCTTCCTTCATCAAATTCAAGATAAATGGTCACTCAAATTAGGGTCCCAAAGGGAAAAATTCCCATGGCAAGAACAAAAACACGAGGTGGAACAACAACAGCAGATAGAAGAAGAAAAAGAAGAAAAAAAGCGTGAGCAGTTCCAGAATCAGAAGAAGCCTTCAGCATCGAATTTTCAGTTTCCAAAGCGAGTTTCGCCTTGGGCGCAGGCAATAAACCCGAGCAGTGCACTGTTAGACTCTGAATCCGATGATTCCGAGGACGAGGAGGACAATGAAGATGTCAAAGGTAAAGCGTTGCAACACAACTCTATTGGTTCTGTTCGTGAAGAAAGAAAGGGAATGGCGAGTGAGGTTTCTTCGAATGAAGCAGAAAGAGTAAATGGGGAGAGGAAAAAGAGAAGAAGCAATACAGAGTTGGCAGAGAGGACGATTCCTGAACATGAGTTGCGGAGGCTGAGAAAGATTGCCTTGAGGATGATGGAGAGATTTGATGTTGGAGTAAAAGGCATCACGCAGGAACTGGTAGCTTCAGTTCACCAAAAGTGGAGAGATGCTGAAGTTGTTAAGTTCAAGTTTGGCATTCCTCTTTCTGCTCACATGAAAAAGGCTCATCAAATTCTAGAGAGTAAAATTGGAGGCATAGTGATATGGCGATCGGGCAGTTCCATAGTGTTGTATCGGGGAATGGCCTACAAGCTTCCCTGCATAGAAAATTATAAGAAAGTGAATCTTGCTAAGGAGAATGCTGTGGATCACTCACTACATGTTGGAAATGGAAGTGATGGTCAAGCGAGTGTTAACGAAACAGTTGGAACTGCAGAGTCGGTCATCCAAGAATCTGCTGAGTATTTGAAGGACATGAGTGAAGAAGAATTGATGGAAATGTGTGACCTCAACCATTTGTTAGATGAATTGGGTCCACGTTTCAAAGATTGGACAGGCCGTCAACCATTGCCTGTTGATGCAGACTTGTTGCCAGCTGTGGTTCCAGGATATAAAACCCCATTCAGACTTCTTCCTTATCGGATAAGGCCTTGTTTAACCAACAAGGAAATGACTAACTTCCGTAGGCTTGCAAGAACAACAGCTCCACATTTTGCCCTTGGCAGAAACAGAGAATTGCAAGGTCTGGCTCGTGCTATGGTGAAACTGTGGGAAACAAGTGCTATTGCAAAAATTGCCATCAAACGAGGTGTTCCTAATACATGTAATGACAGGATGGCTGAAGAACTCAGGAAATTGACTGGGGGAACTCTACTTTCCAGAAATAAAGAATATATTGTATTTTACAGAGGCAATGACTTCTTGCCTCCTGTTGTTACCAACACTCTGAATGAGAGACAGAAACTAACCCTCCTTCAACAAGATGAGGAAGACAAAGCACGACAAATTGCCTCATCTATTACTGTATCAAATAGCAAAGCAGCTCAAGTGCCATTAATTGCTGGCACCCTTACTGAGACTAGGGCAGCAACCACCAACTGGGGACACCAACCAAGTAAACAAGAAATTGAGAACATGATCAGAGATTCTGCCATGAATAAACTTTCTGCTTTAGTAAAACACCATGAGAAGAAACTAGCTCTAGCAAAATCAAAATTCAGGAAGGCTGAGAAGGCTTTAGCAAAAGTTCAGCGTGATCTGGACCCAGCTGATATTCCTAGTGATTTGGAAACATTAACTAATGAAGAGAGATTCTTATTTAGGAAGATTGGTCTGAGTATGAAGCCATACTTACTTCTAGGGAGGCGAGATGTTTATGCTGGCACAATAGAAAACATGCATCTACACTGGAAATATCGTGAATTGGTAAAGTTAATTGTAAAAGGGAGAAATTCAGCCCAAGTCAAGCATATCTCAATATCTTTGGAAGCTGAGAGTGGTGGAGTGCTAGTGTCTGTAGATAAGGACACCAGAGGCCATCATACAATTATTGTTTATCGTGGGAAGAACTATTTCAGCCCGCGTGTCGTGAGACCCAAAAACTTGTTGACACGAAGACAGGCATTGGCTCGATCTGTTGAGCTTCAAAGGCGAGAGGCACTAAAACATCATATCTCAGACTTAGAGGAGAGAATTGGATTGCTGAAATCTGAGCTGGAGGATATGAAGAATGGAAAGGAGATTGAAGATAGCAAAACTCTGTACCCAGCACTGGAGAATCCTGTTTCTTCTGATGATGACTTGGAAGAGCTAAATATTTTCTTTCCGTAA >Glyma17g06210.2 sequence type=CDS gene model=Glyma17g06210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCTTCAACCAATTCCATTAAATTGTTCTTCTTCCACACCGTGTAGCTATTCTTCTCTGCATTTTCTCAAATTCAGAGTTTCTTGTTCGAACCAGACATCGCAACTTGACACTCCACAACGAGTGAAGGTAGCGAACAAGACAAAAAACAGCAGCCACAGGCCAAGCTTCCTTCATCAAATTCAAGATAAATGGTCACTCAAATTAGGGTCCCAAAGGGAAAAATTCCCATGGCAAGAACAAAAACACGAGGTGGAACAACAACAGCAGATAGAAGAAGAAAAAGAAGAAAAAAAGCGTGAGCAGTTCCAGAATCAGAAGAAGCCTTCAGCATCGAATTTTCAGTTTCCAAAGCGAGTTTCGCCTTGGGCGCAGGCAATAAACCCGAGCAGTGCACTGTTAGACTCTGAATCCGATGATTCCGAGGACGAGGAGGACAATGAAGATGTCAAAGGTAAAGCGTTGCAACACAACTCTATTGGTTCTGTTCGTGAAGAAAGAAAGGGAATGGCGAGTGAGGTTTCTTCGAATGAAGCAGAAAGAGTAAATGGGGAGAGGAAAAAGAGAAGAAGCAATACAGAGTTGGCAGAGAGGACGATTCCTGAACATGAGTTGCGGAGGCTGAGAAAGATTGCCTTGAGGATGATGGAGAGATTTGATGTTGGAGTAAAAGGCATCACGCAGGAACTGGTAGCTTCAGTTCACCAAAAGTGGAGAGATGCTGAAGTTGTTAAGTTCAAGTTTGGCATTCCTCTTTCTGCTCACATGAAAAAGGCTCATCAAATTCTAGAGAGTAAAATTGGAGGCATAGTGATATGGCGATCGGGCAGTTCCATAGTGTTGTATCGGGGAATGGCCTACAAGCTTCCCTGCATAGAAAATTATAAGAAAGTGAATCTTGCTAAGGAGAATGCTGTGGATCACTCACTACATGTTGGAAATGGAAGTGATGGTCAAGCGAGTGTTAACGAAACAGTTGGAACTGCAGAGTCGGTCATCCAAGAATCTGCTGAGTATTTGAAGGACATGAGTGAAGAAGAATTGATGGAAATGTGTGACCTCAACCATTTGTTAGATGAATTGGGTCCACGTTTCAAAGATTGGACAGGCCGTCAACCATTGCCTGTTGATGCAGACTTGTTGCCAGCTGTGGTTCCAGGATATAAAACCCCATTCAGACTTCTTCCTTATCGGATAAGGCCTTGTTTAACCAACAAGGAAATGACTAACTTCCGTAGGCTTGCAAGAACAACAGCTCCACATTTTGCCCTTGGCAGAAACAGAGAATTGCAAGGTCTGGCTCGTGCTATGGTGAAACTGTGGGAAACAAGTGCTATTGCAAAAATTGCCATCAAACGAGGTGTTCCTAATACATGTAATGACAGGATGGCTGAAGAACTCAGGAAATTGACTGGGGGAACTCTACTTTCCAGAAATAAAGAATATATTGTATTTTACAGAGGCAATGACTTCTTGCCTCCTGTTGTTACCAACACTCTGAATGAGAGACAGAAACTAACCCTCCTTCAACAAGATGAGGAAGACAAAGCACGACAAATTGCCTCATCTATTACTGTATCAAATAGCAAAGCAGCTCAAGTGCCATTAATTGCTGGCACCCTTACTGAGACTAGGGCAGCAACCACCAACTGGGGACACCAACCAAGTAAACAAGAAATTGAGAACATGATCAGAGATTCTGCCATGAATAAACTTTCTGCTTTAGTAAAACACCATGAGAAGAAACTAGCTCTAGCAAAATCAAAATTCAGGAAGGCTGAGAAGGCTTTAGCAAAAGTTCAGCGTGATCTGGACCCAGCTGATATTCCTAGTGATTTGGAAACATTAACTAATGAAGAGAGATTCTTATTTAGGAAGATTGGTCTGAGTATGAAGCCATACTTACTTCTAGGGAGGCGAGATGTTTATGCTGGCACAATAGAAAACATGCATCTACACTGGAAATATCGTGAATTGGTAAAGTTAATTGTAAAAGGGAGAAATTCAGCCCAAGTCAAGCATATCTCAATATCTTTGGAAGCTGAGAGTGGTGGAGTGCTAGTGTCTGTAGATAAGGACACCAGAGGCCATCATACAATTATTGTTTATCGTGGGAAGAACTATTTCAGCCCGCGTGTCGTGAGACCCAAAAACTTGTTGACACGAAGACAGGCATTGGCTCGATCTGTTGAGCTTCAAAGGCGAGAGGTAATATAA
>Glyma17g06210.1 sequence type=predicted peptide gene model=Glyma17g06210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALQPIPLNCSSSTPCSYSSLHFLKFRVSCSNQTSQLDTPQRVKVANKTKNSSHRPSFLHQIQDKWSLKLGSQREKFPWQEQKHEVEQQQQIEEEKEEKKREQFQNQKKPSASNFQFPKRVSPWAQAINPSSALLDSESDDSEDEEDNEDVKGKALQHNSIGSVREERKGMASEVSSNEAERVNGERKKRRSNTELAERTIPEHELRRLRKIALRMMERFDVGVKGITQELVASVHQKWRDAEVVKFKFGIPLSAHMKKAHQILESKIGGIVIWRSGSSIVLYRGMAYKLPCIENYKKVNLAKENAVDHSLHVGNGSDGQASVNETVGTAESVIQESAEYLKDMSEEELMEMCDLNHLLDELGPRFKDWTGRQPLPVDADLLPAVVPGYKTPFRLLPYRIRPCLTNKEMTNFRRLARTTAPHFALGRNRELQGLARAMVKLWETSAIAKIAIKRGVPNTCNDRMAEELRKLTGGTLLSRNKEYIVFYRGNDFLPPVVTNTLNERQKLTLLQQDEEDKARQIASSITVSNSKAAQVPLIAGTLTETRAATTNWGHQPSKQEIENMIRDSAMNKLSALVKHHEKKLALAKSKFRKAEKALAKVQRDLDPADIPSDLETLTNEERFLFRKIGLSMKPYLLLGRRDVYAGTIENMHLHWKYRELVKLIVKGRNSAQVKHISISLEAESGGVLVSVDKDTRGHHTIIVYRGKNYFSPRVVRPKNLLTRRQALARSVELQRREALKHHISDLEERIGLLKSELEDMKNGKEIEDSKTLYPALENPVSSDDDLEELNIFFP* >Glyma17g06210.2 sequence type=predicted peptide gene model=Glyma17g06210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALQPIPLNCSSSTPCSYSSLHFLKFRVSCSNQTSQLDTPQRVKVANKTKNSSHRPSFLHQIQDKWSLKLGSQREKFPWQEQKHEVEQQQQIEEEKEEKKREQFQNQKKPSASNFQFPKRVSPWAQAINPSSALLDSESDDSEDEEDNEDVKGKALQHNSIGSVREERKGMASEVSSNEAERVNGERKKRRSNTELAERTIPEHELRRLRKIALRMMERFDVGVKGITQELVASVHQKWRDAEVVKFKFGIPLSAHMKKAHQILESKIGGIVIWRSGSSIVLYRGMAYKLPCIENYKKVNLAKENAVDHSLHVGNGSDGQASVNETVGTAESVIQESAEYLKDMSEEELMEMCDLNHLLDELGPRFKDWTGRQPLPVDADLLPAVVPGYKTPFRLLPYRIRPCLTNKEMTNFRRLARTTAPHFALGRNRELQGLARAMVKLWETSAIAKIAIKRGVPNTCNDRMAEELRKLTGGTLLSRNKEYIVFYRGNDFLPPVVTNTLNERQKLTLLQQDEEDKARQIASSITVSNSKAAQVPLIAGTLTETRAATTNWGHQPSKQEIENMIRDSAMNKLSALVKHHEKKLALAKSKFRKAEKALAKVQRDLDPADIPSDLETLTNEERFLFRKIGLSMKPYLLLGRRDVYAGTIENMHLHWKYRELVKLIVKGRNSAQVKHISISLEAESGGVLVSVDKDTRGHHTIIVYRGKNYFSPRVVRPKNLLTRRQALARSVELQRREVI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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