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Report for Sequence Feature Glyma17g06120

Feature Type:gene_model
Chromosome:Gm17
Start:4324931
stop:4333152
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g06120
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G19450AT Annotation by Michelle Graham. TAIR10: membrane bound O-acyl transferase (MBOAT) family protein | chr2:8426436-8429455 FORWARD LENGTH=520 SoyBaseE_val: 0ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0007568GO-bp Annotation by Michelle Graham. GO Biological Process: aging SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0010029GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of seed germination SoyBaseN/AISS
GO:0010030GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of seed germination SoyBaseN/AISS
GO:0019432GO-bp Annotation by Michelle Graham. GO Biological Process: triglyceride biosynthetic process SoyBaseN/AISS
GO:0045995GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of embryonic development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004144GO-mf Annotation by Michelle Graham. GO Molecular Function: diacylglycerol O-acyltransferase activity SoyBaseN/AISS
GO:0008374GO-mf Annotation by Michelle Graham. GO Molecular Function: O-acyltransferase activity SoyBaseN/AISS
KOG0380 KOG Sterol O-acyltransferase/Diacylglycerol O-acyltransferase JGI ISS
PTHR10408Panther STEROL O-ACYLTRANSFERASE JGI ISS
PF03062PFAM MBOAT family JGI ISS
UniRef100_I1MSF2UniRef Annotation by Michelle Graham. Most informative UniRef hit: O-acyltransferase n=1 Tax=Glycine max RepID=I1MSF2_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1MSF2UniRef Annotation by Michelle Graham. Best UniRef hit: O-acyltransferase n=1 Tax=Glycine max RepID=I1MSF2_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma17g06120
LocusGene SymbolProtein Name
DGAT1B diacylglycerol acyltransferase 1 gene B

Expression Patterns of Glyma17g06120
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g06120
ParalogEvidenceComments
Glyma13g16560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g06120 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g053300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g06120
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g06120
>Glyma17g06120.1   sequence type=CDS   gene model=Glyma17g06120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGATTTCCGATGAGCCTGAAAGTGTAGCCACTGCTCTCAACCACTCTTCCCTGCGCCGCCGTCCCTCCGCCACCTCCACCGCCGGCCTCTTCAATTCGCCTGAGACAACCACCGACAGTTCCGGTGATGACTTGGCCAAGGATTCTGGTTCCGACGACTCCATCAACAGCGACGACGCCGCCGTCAATTCCCAACAGCAAAACGAAAAACAAGACACTGATTTCTCCGTCCTCAAATTCGCCTACCGTCCTTCCGTCCCCGCTCACCGCAAAGTGAAGGAAAGTCCGCTCAGCTCCGACACTATTTTCCGTCAGAGTCACGCGGGCCTCTTCAACCTTTGTATAGTAGTCCTTGTTGCTGTGAATAGCCGACTCATCATTGAGAATTTAATGAAGTATGGTTGGTTGATCAAATCTGGCTTTTGGTTTAGTTCAAAGTCATTGAGAGACTGGCCCCTTTTCATGTGTTGTCTTTCTCTTGTGGTATTTCCTTTCGCTGCCTTTATAGTGGAGAAGTTGGCACAACGGAAGTGTATACCCGAACCAGTTGTTGTTGTACTTCATATAATCATTACCTCAACTTCGCTTTTCTATCCAGTTTTAGTTATTCTCAGGTGTGATTCTGCTTTTGTATCAGGTGTCACGTTAATGCTGTTTTCTTGTGTTGTATGGTTAAAATTGGTGTCTTATGCACATACAAACTATGATATGAGAGCACTTACCAAATTAGTTGAAAAGGGAGAAGCACTGCTCGATACTCTGAACATGGACTATCCTTACAACGTAAGCTTCAAGAGCTTGGCATATTTCCTGGTTGCCCCTACATTATGTTACCAGCCAAGCTATCCTCGCACACCTTATATTCGAAAGGGTTGGTTGTTTCGCCAACTTGTCAAGCTGATAATATTTACAGGAGTTATGGGATTTATAATAGAACAATATATTAATCCCATAGTACAAAATTCACAGCATCCTCTCAAGGGAAACCTTCTTTACGCCACCGAGAGAGTTCTGAAGCTTTCTGTTCCAAATTTATATGTGTGGCTCTGCATGTTCTATTGCTTTTTCCACCTTTGGTTAAATATCCTGGCAGAGCTTCTTCGATTTGGTGATCGTGAATTCTACAAGGATTGGTGGAATGCCAAAACTGTCGAAGATTATTGGAGGATGTGGAATATGCCTGTTCACAAATGGATGATCCGCCACCTATATTTTCCATGTTTAAGGCACGGTCTACCAAAGGCTGCTGCTCTTTTAATTGCCTTCCTGGTTTCTGCTTTATTCCATGAGCTGTGCATTGCTGTTCCTTGCCACATATTCAAGTTGTGGGCTTTCGGTGGAATTATGTTTCAGGTTCCTTTGGTCTTGATCACTAATTATCTGCAAAATAAATTCAGAAACTCAATGGTTGGAAATATGATTTTTTGGTTCATATTCAGTATCCTTGGTCAACCTATGTGTGTACTGCTATACTACCATGACTTGATGAATAGGAAAGGCAAACTTGACTGA
Predicted protein sequences of Glyma17g06120
>Glyma17g06120.1   sequence type=predicted peptide   gene model=Glyma17g06120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAISDEPESVATALNHSSLRRRPSATSTAGLFNSPETTTDSSGDDLAKDSGSDDSINSDDAAVNSQQQNEKQDTDFSVLKFAYRPSVPAHRKVKESPLSSDTIFRQSHAGLFNLCIVVLVAVNSRLIIENLMKYGWLIKSGFWFSSKSLRDWPLFMCCLSLVVFPFAAFIVEKLAQRKCIPEPVVVVLHIIITSTSLFYPVLVILRCDSAFVSGVTLMLFSCVVWLKLVSYAHTNYDMRALTKLVEKGEALLDTLNMDYPYNVSFKSLAYFLVAPTLCYQPSYPRTPYIRKGWLFRQLVKLIIFTGVMGFIIEQYINPIVQNSQHPLKGNLLYATERVLKLSVPNLYVWLCMFYCFFHLWLNILAELLRFGDREFYKDWWNAKTVEDYWRMWNMPVHKWMIRHLYFPCLRHGLPKAAALLIAFLVSALFHELCIAVPCHIFKLWAFGGIMFQVPLVLITNYLQNKFRNSMVGNMIFWFIFSILGQPMCVLLYYHDLMNRKGKLD*






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