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Report for Sequence Feature Glyma17g06110

Feature Type:gene_model
Chromosome:Gm17
Start:4317965
stop:4320919
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g06110
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G54270AT Annotation by Michelle Graham. TAIR10: eif4a-2 | chr1:20260495-20262018 FORWARD LENGTH=412 SoyBaseE_val: 0ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003743GO-mf Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity SoyBaseN/AISS
GO:0004386GO-mf Annotation by Michelle Graham. GO Molecular Function: helicase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008026GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity SoyBaseN/AISS
KOG0327 KOG Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases JGI ISS
PTHR24031Panther FAMILY NOT NAMED JGI ISS
PTHR24031:SF2Panther SUBFAMILY NOT NAMED JGI ISS
PF00270PFAM DEAD/DEAH box helicase JGI ISS
PF00271PFAM Helicase conserved C-terminal domain JGI ISS
UniRef100_A2Q689UniRef Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic initiation factor 4A n=1 Tax=Medicago truncatula RepID=A2Q689_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233E0D3UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E0D3 related cluster n=1 Tax=unknown RepID=UPI000233E0D3 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g06110
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g06110
ParalogEvidenceComments
Glyma13g16570 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g06110 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g053200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g06110
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g06110
>Glyma17g06110.1   sequence type=CDS   gene model=Glyma17g06110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGACTAGCACCTGAGGGGTCACAGTTCGATGCTCGTCAATATGATTCCAAAATGAGTGACTTACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGATAGTTTTGACGCTATGGGTTTGCAGGAGAATCTTCTCAGGGGAATTTACGCATACGGTTTTGAGAAGCCATCAGCCATTCAGCAAAGGGGGATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAACAGGCTCAATCTGGAACTGGGAAGACGGCTACTTTCTGCTCTGGTATTCTGCAGCAACTTGACTATAGCTTGACTCAATGCCAGGCCTTGGTTTTGGCACCAACTCGTGAGCTTGCTCAGCAGATTGAGAAAGTTATGCGGGCACTTGGAGATTATCAAGGTGTGAAGGTTCATGCTTGTGTGGGAGGTACCAGTGTGCGTGAGGACCAGCGCATTCTATCTAGTGGTGTTCATGTTGTGGTTGGTACCCCTGGTCGTGTGTTTGATATGCTGCGCCGACAGTCACTTCAGCCAGACCACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGAGGTTTCAAGGATCAGATCTACGATATATTTCAGCTGCTTCCATCTAAGATTCAAGTGGGAGTTTTCTCTGCCACAATGCCTCCTGAGGCCCTTGAGATCACCAGGAAGTTTATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATTAAGCAATTTTATGTCAATGTTGAAAAGGAGGAATGGAAGCTGGACACACTCTGCGATCTTTATGAGACATTAGCTATCACTCAGAGTGTCATTTTTGTTAACACCAGAAGGAAAGTTGATTGGTTGACTGACAAGATGAGAAGCCGTGACCACACAGTCTCAGCAACCCACGGAGACATGGACCAGAATACCAGGGACATTATTATGCGTGAATTCCGTTCTGGGTCTTCCCGTGTCTTGATAACCACTGATCTTTTGGCTCGTGGTATTGATGTCCAACAAGTGTCTCTAGTTATAAATTTTGATCTCCCAACACAGCCTGAGAACTATCTCCATCGTATTGGTCGTAGTGGGAGGTTCGGAAGGAAGGGTGTTGCGATCAACTTTGTCACAAAGGATGACGAGAAAATGCTGTTTGACATCCAGAAGTTTTACAACGTGCAAGTTGAGGAGCTGCCTTCAAATGTTGCTGAGCTCCTTTGA
Predicted protein sequences of Glyma17g06110
>Glyma17g06110.1   sequence type=predicted peptide   gene model=Glyma17g06110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGLAPEGSQFDARQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLQPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDEKMLFDIQKFYNVQVEELPSNVAELL*






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