Glyma17g06010 - SoyBase

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Report for Sequence Feature Glyma17g06010

Feature Type:	gene_model
Chromosome:	Gm17
Start:	4237053
stop:	4241112
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g06010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26060	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L18ae family \| chr4:13214972-13215955 REVERSE LENGTH=133	SoyBase	E_val: 5.00E-48	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PTHR10052	Panther	60S RIBOSOMAL PROTEIN L18A	JGI		ISS
PTHR10052:SF2	Panther	60S RIBOSOMAL PROTEIN L18A, PLANT	JGI		ISS
UniRef100_F4HV88	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L18ae family protein n=1 Tax=Arabidopsis thaliana RepID=F4HV88_ARATH	SoyBase	E_val: 2.00E-22	ISS
UniRef100_I1MSE1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSE1_SOYBN	SoyBase	E_val: 3.00E-102	ISS

Expression Patterns of Glyma17g06010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g06010

Paralog	Evidence	Comments
Glyma13g16680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g06010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g052300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g06010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g06010

Limit To All Plant Sequences

>Glyma17g06010.2   sequence type=CDS   gene model=Glyma17g06010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAAGATGCTAGGGTGGAAGAGACTGTTGATTTGCGAACCAATGTGGAGTTGGTGAGATCAGTCTCTGATAAGCATCATGATCTTTTAAGGCCATCTGCTCGGAACTATTCAAGAGGACAATCAACAGATACAACTGGCCGTGGAAAGGGAAAGTATGCCTTAATTAGAGACCCAGAGGACTTCCAAATGGGAGTTTATGATAAGCCCCTTCCATGTTTTGGATGTGGAATCGGATGGTTCTCATTTCTTTTTGGATTTCTATGCCCTCCTATGTGGTTCTATGCTACAATTCTCTATTTTGGAAATCACTATCGGAAGGATCCTAGGGAGCGAGCAGGGCTGGGAGCCTCTGCAATTGCTGCATTAGTGTGTTCTGTAACGTCGCTGATAATTGGAGTAATTCTTGTGTTGCGGTACCTCTATTTCTAA

Predicted protein sequences of Glyma17g06010

Limit To All Plant Sequences

>Glyma17g06010.2   sequence type=predicted peptide   gene model=Glyma17g06010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKDARVEETVDLRTNVELVRSVSDKHHDLLRPSARNYSRGQSTDTTGRGKGKYALIRDPEDFQMGVYDKPLPCFGCGIGWFSFLFGFLCPPMWFYATILYFGNHYRKDPRERAGLGASAIAALVCSVTSLIIGVILVLRYLYF*

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