Glyma17g05960 - SoyBase

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Report for Sequence Feature Glyma17g05960

Feature Type:	gene_model
Chromosome:	Gm17
Start:	4194563
stop:	4199089
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g05960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G35460	AT	Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2838 (InterPro:IPR021261); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:13672598-13674546 FORWARD LENGTH=381	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2895	KOG	Uncharacterized conserved protein	JGI		ISS
PF10998	PFAM	Protein of unknown function (DUF2838)	JGI		ISS
UniRef100_I1MSD4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSD4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FJB4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g35460/MOK9_4 n=1 Tax=Arabidopsis thaliana RepID=Q9FJB4_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g05960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g05960

Paralog	Evidence	Comments
Glyma13g16720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g05960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g051800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g05960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g05960

Limit To All Plant Sequences

>Glyma17g05960.2   sequence type=transcript   gene model=Glyma17g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAAAGTTATCTTCAACCTTTCCTTTTCCTTCTTGTTGCTGGAGATTACCCTTGATCTCGAAACCAAGGGAGAAGCACTATCAGGTATTCAAGTTGAGGCTTAAAAAAAAAAAGGCGTGTGCATGTAAATGATTAACCAGATAGTTCCATTTGAGAGTTAAAGCTTCCATTTCATTGCAAGGCTTGATTTGCTTGTCGTGAATTGGATAACTCCAATCAAAACACCGCCACCTGTGTCTTCGCGTTCACCACTGTGCAGTAAATATGTCTGACACCGAAGACCATGCAGCAGAGTATTCCAATGGTGACGAATCCCCTCCAAAGCCCAGACAGAGGTTCAGGGACAGATCTAAGGAGATGCTGTCCAAACAAGCTGTGCAGACCAAGCAAATGCTTTCCAAACAGGCCGTTAAGATTGCCAAACAAGCTGAGGAACACGAAAGGTTCATCAACAAGGTGACCCATCTCGCGGGAGTCCTCGGTTTTGGTGGATTTTGCTTCCTTTTAGGGGCACGACCCCAAGATATTCCCTATGTATATTGTTTGTTTTACGTCATCTTTGTTCCTCTTCGTTGGATATACTATAGGTCCAAGAAATGGCATTACTATCTACTGGGGCCATTAGCATGGGCTTTGATTGTTTGGCGCTGCAGCTTGGTTTTCAGTTCTCTTGACAAAATTGTCAGTGTTCTTATCCATCTATTACCTGGATTGGTTTTCTTTACTATTCGATGGTGGAATCCTGCAACCTTTGAAGCCATGCATCCAGAGGGAACTGCTAGAAGACCTACGTGGCCATACATCGAAGATAAATCCTATCTCTGGACATGGCTGTTTCTGGTACCCTTGGTTGCTTACACTTTGTGGCAGGTTCTATACTTCCTCATTGTCAATGTATTACGCAGACAAAGGCTTTTAAGAGATCCCGAAGTCATGACTTCCTACAGGGAACTCTCAAAAAAGGCTCAGAAAGCAAACAACATATGGTGGCGCTTAAGTGGGTTGCTTGGGGATCAAAATCGCATGCTGATGTACATTTTTCTTCAAGGCATATTTACGGTGGCAACCATGGCACTTACTGTCCCCATATTCTTGTCATATGAATTGCATGTAGTTTTTCAAATACTAAAGGTTTCTGCCTCAATATGGAACGGAGGAAGTTTTCTGTTAGAGGTAATGCCTAGACAGGCAATTCTTAAGGAGAAAAAGAAATCAGAGATGCAACCTGTTGAAGCTCAACCCAATCATGATCATCAATAGAGATGGAAAATGACAGGAACTAGGAAGTTAAAACAATGTTGTTGTGACATCTCACTCCTTGCTCAACTAATATCCACGTATTTTGAAGTTGTAATTGTATTTGTTGATTTCTTTTTACTG

>Glyma17g05960.3   sequence type=transcript   gene model=Glyma17g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTTAATAATTAAAATAGTTAGAATAGTGTCTATTTTCCCATTAATCACTAATTCATTATCACGCAGATACAGTACTGATATTATTGTTTTATGAGTTTCCTGCAATGAAAGTTTAGTTACACGATTGCCCATGTTTCAGGATTTTTGCTATTATGCCAATACAATATTTTTGATTGATCTTCTTTTTTACTCATCAAATGAGAAGCTTTTCATGGTTTGCTTTTCTTTTGCGGAGGGGCCATTAGCATGGGCTTTGATTGTTTGGCGCTGCAGCTTGGTTTTCAGTTCTCTTGACAAAATTGTCAGTGTTCTTATCCATCTATTACCTGGATTGGTTTTCTTTACTATTCGATGGTGGAATCCTGCAACCTTTGAAGCCATGCATCCAGAGGGAACTGCTAGAAGACCTACGTGGCCATACATCGAAGATAAATCCTATCTCTGGACATGGCTGTTTCTGGTACCCTTGGTTGCTTACACTTTGTGGCAGGTTCTATACTTCCTCATTGTCAATGTATTACGCAGACAAAGGCTTTTAAGAGATCCCGAAGTCATGACTTCCTACAGGGAACTCTCAAAAAAGGCTCAGAAAGCAAACAACATATGGTGGCGCTTAAGTGGGTTGCTTGGGGATCAAAATCGCATGCTGATGTACATTTTTCTTCAAGGCATATTTACGGTGGCAACCATGGCACTTACTGTCCCCATATTCTTGTCATATGAATTGCATGTAGTTTTTCAAATACTAAAGGTTTCTGCCTCAATATGGAACGGAGGAAGTTTTCTGTTAGAGGTAATGCCTAGACAGGCAATTCTTAAGGAGAAAAAGAAATCAGAGATGCAACCTGTTGAAGCTCAACCCAATCATGATCATCAATAGAGATGGAAAATGACAGGAACTAGGAAGTTAAAACAATGTTGTTGTGACATCTCACTCCTTGCTCAACTAATATCCACGTATTTTGAAGTTGTAATTGTATTTGTTGATTTCTTTTTACTG

Coding sequences of Glyma17g05960

Limit To All Plant Sequences

>Glyma17g05960.1   sequence type=CDS   gene model=Glyma17g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGACACCGAAGACCATGCAGCAGAGTATTCCAATGGTGACGAATCCCCTCCAAAGCCCAGACAGAGGTTCAGGGACAGATCTAAGGAGATGCTGTCCAAACAAGCTGTGCAGACCAAGCAAATGCTTTCCAAACAGGCCGTTAAGATTGCCAAACAAGCTGAGGAACACGAAAGGTTCATCAACAAGGTGACCCATCTCGCGGGAGTCCTCGGTTTTGGTGGATTTTGCTTCCTTTTAGGGGCACGACCCCAAGATATTCCCTATGTATATTGTTTGTTTTACGTCATCTTTGTTCCTCTTCGTTGGATATACTATAGGTCCAAGAAATGGCATTACTATCTACTGGATTTTTGCTATTATGCCAATACAATATTTTTGATTGATCTTCTTTTTTACTCATCAAATGAGAAGCTTTTCATGGTTTGCTTTTCTTTTGCGGAGGGGCCATTAGCATGGGCTTTGATTGTTTGGCGCTGCAGCTTGGTTTTCAGTTCTCTTGACAAAATTGTCAGTGTTCTTATCCATCTATTACCTGGATTGGTTTTCTTTACTATTCGATGGTGGAATCCTGCAACCTTTGAAGCCATGCATCCAGAGGGAACTGCTAGAAGACCTACGTGGCCATACATCGAAGATAAATCCTATCTCTGGACATGGCTGTTTCTGGTACCCTTGGTTGCTTACACTTTGTGGCAGGTTCTATACTTCCTCATTGTCAATGTATTACGCAGACAAAGGCTTTTAAGAGATCCCGAAGTCATGACTTCCTACAGGGAACTCTCAAAAAAGGCTCAGAAAGCAAACAACATATGGTGGCGCTTAAGTGGGTTGCTTGGGGATCAAAATCGCATGCTGATGTACATTTTTCTTCAAGGCATATTTACGGTGGCAACCATGGCACTTACTGTCCCCATATTCTTGTCATATGAATTGCATGTAGTTTTTCAAATACTAAAGGTTTCTGCCTCAATATGGAACGGAGGAAGTTTTCTGTTAGAGGTAATGCCTAGACAGGCAATTCTTAAGGAGAAAAAGAAATCAGAGATGCAACCTGTTGAAGCTCAACCCAATCATGATCATCAATAG

>Glyma17g05960.2   sequence type=CDS   gene model=Glyma17g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGACACCGAAGACCATGCAGCAGAGTATTCCAATGGTGACGAATCCCCTCCAAAGCCCAGACAGAGGTTCAGGGACAGATCTAAGGAGATGCTGTCCAAACAAGCTGTGCAGACCAAGCAAATGCTTTCCAAACAGGCCGTTAAGATTGCCAAACAAGCTGAGGAACACGAAAGGTTCATCAACAAGGTGACCCATCTCGCGGGAGTCCTCGGTTTTGGTGGATTTTGCTTCCTTTTAGGGGCACGACCCCAAGATATTCCCTATGTATATTGTTTGTTTTACGTCATCTTTGTTCCTCTTCGTTGGATATACTATAGGTCCAAGAAATGGCATTACTATCTACTGGGGCCATTAGCATGGGCTTTGATTGTTTGGCGCTGCAGCTTGGTTTTCAGTTCTCTTGACAAAATTGTCAGTGTTCTTATCCATCTATTACCTGGATTGGTTTTCTTTACTATTCGATGGTGGAATCCTGCAACCTTTGAAGCCATGCATCCAGAGGGAACTGCTAGAAGACCTACGTGGCCATACATCGAAGATAAATCCTATCTCTGGACATGGCTGTTTCTGGTACCCTTGGTTGCTTACACTTTGTGGCAGGTTCTATACTTCCTCATTGTCAATGTATTACGCAGACAAAGGCTTTTAAGAGATCCCGAAGTCATGACTTCCTACAGGGAACTCTCAAAAAAGGCTCAGAAAGCAAACAACATATGGTGGCGCTTAAGTGGGTTGCTTGGGGATCAAAATCGCATGCTGATGTACATTTTTCTTCAAGGCATATTTACGGTGGCAACCATGGCACTTACTGTCCCCATATTCTTGTCATATGAATTGCATGTAGTTTTTCAAATACTAAAGGTTTCTGCCTCAATATGGAACGGAGGAAGTTTTCTGTTAGAGGTAATGCCTAGACAGGCAATTCTTAAGGAGAAAAAGAAATCAGAGATGCAACCTGTTGAAGCTCAACCCAATCATGATCATCAATAG

>Glyma17g05960.3   sequence type=CDS   gene model=Glyma17g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCAGGATTTTTGCTATTATGCCAATACAATATTTTTGATTGATCTTCTTTTTTACTCATCAAATGAGAAGCTTTTCATGGTTTGCTTTTCTTTTGCGGAGGGGCCATTAGCATGGGCTTTGATTGTTTGGCGCTGCAGCTTGGTTTTCAGTTCTCTTGACAAAATTGTCAGTGTTCTTATCCATCTATTACCTGGATTGGTTTTCTTTACTATTCGATGGTGGAATCCTGCAACCTTTGAAGCCATGCATCCAGAGGGAACTGCTAGAAGACCTACGTGGCCATACATCGAAGATAAATCCTATCTCTGGACATGGCTGTTTCTGGTACCCTTGGTTGCTTACACTTTGTGGCAGGTTCTATACTTCCTCATTGTCAATGTATTACGCAGACAAAGGCTTTTAAGAGATCCCGAAGTCATGACTTCCTACAGGGAACTCTCAAAAAAGGCTCAGAAAGCAAACAACATATGGTGGCGCTTAAGTGGGTTGCTTGGGGATCAAAATCGCATGCTGATGTACATTTTTCTTCAAGGCATATTTACGGTGGCAACCATGGCACTTACTGTCCCCATATTCTTGTCATATGAATTGCATGTAGTTTTTCAAATACTAAAGGTTTCTGCCTCAATATGGAACGGAGGAAGTTTTCTGTTAGAGGTAATGCCTAGACAGGCAATTCTTAAGGAGAAAAAGAAATCAGAGATGCAACCTGTTGAAGCTCAACCCAATCATGATCATCAATAG

Predicted protein sequences of Glyma17g05960

Limit To All Plant Sequences

>Glyma17g05960.1   sequence type=predicted peptide   gene model=Glyma17g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDTEDHAAEYSNGDESPPKPRQRFRDRSKEMLSKQAVQTKQMLSKQAVKIAKQAEEHERFINKVTHLAGVLGFGGFCFLLGARPQDIPYVYCLFYVIFVPLRWIYYRSKKWHYYLLDFCYYANTIFLIDLLFYSSNEKLFMVCFSFAEGPLAWALIVWRCSLVFSSLDKIVSVLIHLLPGLVFFTIRWWNPATFEAMHPEGTARRPTWPYIEDKSYLWTWLFLVPLVAYTLWQVLYFLIVNVLRRQRLLRDPEVMTSYRELSKKAQKANNIWWRLSGLLGDQNRMLMYIFLQGIFTVATMALTVPIFLSYELHVVFQILKVSASIWNGGSFLLEVMPRQAILKEKKKSEMQPVEAQPNHDHQ*

>Glyma17g05960.2   sequence type=predicted peptide   gene model=Glyma17g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDTEDHAAEYSNGDESPPKPRQRFRDRSKEMLSKQAVQTKQMLSKQAVKIAKQAEEHERFINKVTHLAGVLGFGGFCFLLGARPQDIPYVYCLFYVIFVPLRWIYYRSKKWHYYLLGPLAWALIVWRCSLVFSSLDKIVSVLIHLLPGLVFFTIRWWNPATFEAMHPEGTARRPTWPYIEDKSYLWTWLFLVPLVAYTLWQVLYFLIVNVLRRQRLLRDPEVMTSYRELSKKAQKANNIWWRLSGLLGDQNRMLMYIFLQGIFTVATMALTVPIFLSYELHVVFQILKVSASIWNGGSFLLEVMPRQAILKEKKKSEMQPVEAQPNHDHQ*

>Glyma17g05960.3   sequence type=predicted peptide   gene model=Glyma17g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFQDFCYYANTIFLIDLLFYSSNEKLFMVCFSFAEGPLAWALIVWRCSLVFSSLDKIVSVLIHLLPGLVFFTIRWWNPATFEAMHPEGTARRPTWPYIEDKSYLWTWLFLVPLVAYTLWQVLYFLIVNVLRRQRLLRDPEVMTSYRELSKKAQKANNIWWRLSGLLGDQNRMLMYIFLQGIFTVATMALTVPIFLSYELHVVFQILKVSASIWNGGSFLLEVMPRQAILKEKKKSEMQPVEAQPNHDHQ*

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