SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G20510 | AT | Annotation by Michelle Graham. TAIR10: alfin-like 5 | chr5:6939991-6942846 REVERSE LENGTH=260 | SoyBase | E_val: 1.00E-128 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0035064 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methylated histone residue binding | SoyBase | N/A | ISS |
| KOG1632 | KOG | Uncharacterized PHD Zn-finger protein | JGI | ISS | |
| PTHR23123 | Panther | PHD/F-BOX CONTAINING PROTEIN | JGI | ISS | |
| PF00628 | PFAM | PHD-finger | JGI | ISS | |
| PF12165 | PFAM | Domain of unknown function (DUF3594) | JGI | ISS | |
| UniRef100_Q06A78 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PHD2 n=1 Tax=Glycine max RepID=Q06A78_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q06A78 | UniRef | Annotation by Michelle Graham. Best UniRef hit: PHD2 n=1 Tax=Glycine max RepID=Q06A78_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g05940 not represented in the dataset |
Glyma17g05940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g16740 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g051600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g05940.2 sequence type=transcript gene model=Glyma17g05940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTATACTCTGTCACCCTTTCCCTTTCTCTTTCTCTTCCATTGCATCACACATCAGTTAATTTAGTTCTCCTTACGCCACAGCAGCACCAAAGTGCAAAAACCTGCTATTGTTCTTTTATTTTCTATGATTTCTCAGAGTACCATACTTGTTGGTATTTTAACCATGTTTCTTATTTTTTTTTATATTAATTAAATAAAGGAGAAAACACAAACAAACAAGGGATGTTAATCTTATCTTGTATTAGTGTGTATTTGAATTTAATAATGAAGGGGTCAATTGATTATCATGTCCACACACTATTAGGCTATTAGCTTTTCTCCGTCTTCCTTTGTTCCTTCTTTCCCTCTCTTTTTCCGCTCCTTATTACTGGAAATGCTGCTTTCTTCTTCTCGCGCTCATCTTCACTGACTACTTCTCTCTCTGCAATTTCCATTGTTGAAGAAGGAGAGAGGTTTTGAGGTGTGGGGTCGGTGATGGACGGTGGTGGAGTGAACTACAACCCTCGCACCGTGGAACAGGTTTTCCGGGACTTCAAGGGCCGTAGAGCTGGCATGATCAAGGCTCTCACCACTGATGTTGAAGAATTTTTCCAGCAGTGCGATCCTGAAAAGGATAATCTTTGTCTGTACGGATTCCCTAATGAGCAATGGGAAGTTAATTTACCTGCGGAAGAAGTTCCTCCGGAGCTTCCTGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGACAAGGACTGGCTGTCTTTGGTTGCCGTTCACAGCGATGCATGGTTACTTGCAGTGGCTTTCTACTTTGGGGCACGATTTGGTTTTGATAATGCTGACAGGAAACGCCTGTTCTCTATGATTAATGATTTACCAACAATATTTGAGATTGTGACTGGAAGCGCAAAAAAACAGACGAAGGAAAAATCATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGGCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAAGAGGTACTGGATGAAGAAGATGACGAGGAGCATGAGGAGACCTTGTGTGGGGCATGTGGGGAGCACTATGCATCCGATGAGTTCTGGATTTGTTGCGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCCAGGGCCGAACACATCAAGCAGTATAAGTGCCCCTCATGCAGCAATAAGAGAGCACGGCCTTGATATAGTTGAGAAGTGGGTCAGTCCTCACCCCTTGTAACTAAATCATGTTGGACGTCTAACTTGTTAGTGGCTTAGGCTTCCTTTGTCATGCCATGATGGTGTGGAATATGTATTCAGTACTTTGGGTCTTGTGAACCTTTCAGTGGATATATTTATTAATATTGATAGTTTGCAGGTTCTGAACATGTCTCCAACTACATCCTTTACTGTACTTATATTTTTAGTACAGTATATGTTAGCGCACATGTCATATTTGCTAGCATGACACATTAGATGGATCAGATCTATGGTTTACCCAATGATAGCAGTGTGGCATCTGCGCAAGCTTTGGAAGAATGACAGAGTTGGCTTTAGGTGCAAATTACAGTCAAAAGTTTTGTTCAGCATTTTATGTAACTAAAATAGTTCTGGGTTCTTCCCTTAAAGCTCCGCCGGGCCATTGGAAATATTATAGGTTGGGCTGAACAGATCTGTTGGAAATATTGACGATACATTGTCTGATGCTTCATACCGTGGCCTGCTGGAATGTGCTTTATTGATCTGGCTTCTGAAACTCGGTAGTATTTACCATTACGGATCATGGGCAAAGAAACTCATCCGAGTTGCTAATTCATCAGTGTGTGAATATGGTCGTGTGTCGGTGTTCTTTTGGAAGGAACCAAAGCCAAATTGTCACAAAGTGGATTGTGAATCTAACTCAGACTTACAAAATCGGTTTATAAGATGAAGATTGTTTCCTATTTATATAATTTATCTCGACAGTAATATCTTTAGTCAATGTGAGACTTTTAACATGTCCCTTTTTGTTTCAGTTACCTGTCATGTGAGACTTTAAACACACATCCTCTATTTAGGGATGATCACAATTAAGATGATTTTTCCAACACAAATATTTTTCATTTAGTGACATCGCA
>Glyma17g05940.1 sequence type=CDS gene model=Glyma17g05940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGGTGGTGGAGTGAACTACAACCCTCGCACCGTGGAACAGGTTTTCCGGGACTTCAAGGGCCGTAGAGCTGGCATGATCAAGGCTCTCACCACTGATGTTGAAGAATTTTTCCAGCAGTGCGATCCTGAAAAGGATAATCTTTGTCTGTACGGATTCCCTAATGAGCAATGGGAAGTTAATTTACCTGCGGAAGAAGTTCCTCCGGAGCTTCCTGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGACAAGGACTGGCTGTCTTTGGTTGCCGTTCACAGCGATGCATGGTTACTTGCAGTGGCTTTCTACTTTGGGGCACGATTTGGTTTTGATAATGCTGACAGGAAACGCCTGTTCTCTATGATTAATGATTTACCAACAATATTTGAGATTGTGACTGGAAGCGCAAAAAAACAGACGAAGGAAAAATCATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGGCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAAGAGGTACTGGATGAAGAAGATGACGAGGAGCATGAGGAGACCTTGTGTGGGGCATGTGGGGAGCACTATGCATCCGATGAGTTCTGGATTTGTTGCGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCCAGGGCCGAACACATCAAGCAGTATAAGTGCCCCTCATGCAGCAATAAGAGAGCACGGCCTTGA >Glyma17g05940.2 sequence type=CDS gene model=Glyma17g05940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGGTGGTGGAGTGAACTACAACCCTCGCACCGTGGAACAGGTTTTCCGGGACTTCAAGGGCCGTAGAGCTGGCATGATCAAGGCTCTCACCACTGATGTTGAAGAATTTTTCCAGCAGTGCGATCCTGAAAAGGATAATCTTTGTCTGTACGGATTCCCTAATGAGCAATGGGAAGTTAATTTACCTGCGGAAGAAGTTCCTCCGGAGCTTCCTGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGACAAGGACTGGCTGTCTTTGGTTGCCGTTCACAGCGATGCATGGTTACTTGCAGTGGCTTTCTACTTTGGGGCACGATTTGGTTTTGATAATGCTGACAGGAAACGCCTGTTCTCTATGATTAATGATTTACCAACAATATTTGAGATTGTGACTGGAAGCGCAAAAAAACAGACGAAGGAAAAATCATCCATTTCAAACCACAGCAGTAACAAATCAAAATCTGGTTCAAAAGGGCGAGGATCTGAATCAGGGAAGTATTCAAAGGAAACAAAGGACGAGGAGGAAGAGGTACTGGATGAAGAAGATGACGAGGAGCATGAGGAGACCTTGTGTGGGGCATGTGGGGAGCACTATGCATCCGATGAGTTCTGGATTTGTTGCGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCCAGGGCCGAACACATCAAGCAGTATAAGTGCCCCTCATGCAGCAATAAGAGAGCACGGCCTTGA
>Glyma17g05940.1 sequence type=predicted peptide gene model=Glyma17g05940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDGGGVNYNPRTVEQVFRDFKGRRAGMIKALTTDVEEFFQQCDPEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDNADRKRLFSMINDLPTIFEIVTGSAKKQTKEKSSISNHSSNKSKSGSKGRGSESGKYSKETKDEEEEVLDEEDDEEHEETLCGACGEHYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* >Glyma17g05940.2 sequence type=predicted peptide gene model=Glyma17g05940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDGGGVNYNPRTVEQVFRDFKGRRAGMIKALTTDVEEFFQQCDPEKDNLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDNADRKRLFSMINDLPTIFEIVTGSAKKQTKEKSSISNHSSNKSKSGSKGRGSESGKYSKETKDEEEEVLDEEDDEEHEETLCGACGEHYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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