SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G17590 | AT | Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit A8 | chr1:6050481-6051984 REVERSE LENGTH=328 | SoyBase | E_val: 7.00E-38 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016602 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CCAAT-binding factor complex | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PTHR12632 | Panther | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | JGI | ISS | |
| PTHR12632:SF5 | Panther | TRANSCRIPTIONAL ACTIVATOR PHP2-RELATED | JGI | ISS | |
| PF02045 | PFAM | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | JGI | ISS | |
| UniRef100_C6TG32 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TG32_SOYBN | SoyBase | E_val: 8.00E-157 | ISS |
| UniRef100_I3TAV3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transcription factor Y subunit A3 n=1 Tax=Medicago truncatula RepID=I3TAV3_MEDTR | SoyBase | E_val: 2.00E-87 | ISS |
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Glyma17g05920 not represented in the dataset |
Glyma17g05920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g16770 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g051400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g05920.2 sequence type=transcript gene model=Glyma17g05920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTGTTGTTGGTATGAGTGGGTTTGATATTAGGGTGTTACTAGCGCGTGGAGGGAGTTGGAAATAGCACGTGGAATATGGGGCGCGTGAGGAAAGTATGAACAGTGAAGGGCGGCGGGGAGGTGAGTGCTGAAGAAGAAGGCCCAAGGGTTGAGGAAGGGTGTAAGTGGGGCCCTCAGAAAACATAAGCAAAGGTAGGAGCGGGTGTTGTGTTGTGAGAGACTATTTAATGGACTTTCTGTGTGCTTCTTCAACAAAGCCATAGAAATGAAAAATTAGAGAGTGAGAAGAGGAAGAAGAACATTCTAGAGGGAGAAACATTACACAACTGAACCCACAATTCTATTACTGTTTGCTTCAAAGGTATTCATTCTCTTTCTCTTATTTTTTCTCCACTCTCCAGTAGCCAGTAGCCACCTTTTCCCTTGCATCCTCCTAACCTTACTGTCGGATTCTATTGGATATAATTGAAGGTTTTGAGAACTAAGGCTGCAATACTGTATACATTCTACTCAAGGAATGGTCAATATCTGGAAATTTGCTATGTGGAAAGGTTAAATGAAGCCATTCTTGTCGAATCATACTGATTCTATGTACAATTGTTCCCAAGTTGGTTGTAGTCATCCAATGGCTCATACTTCTTATCCCTGTGGTGATCCTTATTTTGGTAGTTCAATAGTTGCTTATGGACCACAGGCTATTAATCAACAAATGGTGCCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCAGTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCCAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAAGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCACGCATTGAACAGGGTTAGGGGATCTGGGGGACGCTTTCTTAGCGCCAAACAGCTGCCACAGTCTAATGCAGAACTAGTCACTGATGCCTATCAAAAGAAAGATGCATCAGAGGCAGAAAATCATCCCTCAAGCACCGGTGAAAATGCATCTATCACATTCACAGCCATCTCTGCCTTAACTAGTATGTCCAGTAACAGTGTCAATTTCCCCAACATGGCTGGATCATCGCAATGCAGTGGGGGACTCACCTTTGGTGCTGGAGCTCTCCAATGTACTTCAGTTGGCCGATGAGAGGTGGAACCAATCAAAATCAACTTCACTGCTCTGGCAAATCATCCTTGGCTTAGTCACTTTACTTTCTGTCTTTCATGTGCTACAGAAATGTTGTCTTTTGGAACTGCTTTCCCATGGTTTTTGAAGTTGCTCTTGTTTCTATTGTTGAACTGGACCAGAAAGTTTGTGCTTGAAAATTTAACTTTTTTTATCTGTCCGTGCATGGTCCTTGCTTTGCCCAACCCCATCTCCAACGCCTATAGAACAAAAATGGAGTGAAGAAAATGAAAGTTTGCACATCACTGACATCAACAGGTATCTGGATGAAGTAAACACAACGTTTAATTTGGTATTACCGTACAAAAACACTATGCTAGTGTTTGGTATAGATGAATAAAAAAGAAAGAAAGTATAAGAAATGAAAATAGACGAAAGAGAAATGAAACAGAGAAAAATGGAGTAATTCTTCGATTTGACACACATTTGATGTGTCTTATCGTTTGCTCTCATGTTTCTTTAATTTCATGGGGATAACCTATGAAAGTGGGTGACGATTAGCATGGGAAAGACTAATTTGTCTCCGTTATGGGAGATGTTTGTGGTTTATAAAACATATTGATATCATATTGG
>Glyma17g05920.1 sequence type=CDS gene model=Glyma17g05920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCCATTCTTGTCGAATCATACTGATTCTATGTACAATTGTTCCCAAGTTGGTTGTAGTCATCCAATGGCTCATACTTCTTATCCCTGTGGTGATCCTTATTTTGGTAGTTCAATAGTTGCTTATGGACCACAGGCTATTAATCAACAAATGGTGCCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCAGTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCCAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAAGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCACGCATTGAACAGGGTTAGGGGATCTGGGGGACGCTTTCTTAGCGCCAAACAGCTGCCACAGTCTAATGCAGAACTAGTCACTGATGCCTATCAAAAGAAAGATGCATCAGAGGCAGAAAATCATCCCTCAAGCACCGGTGAAAATGCATCTATCACATTCACAGCCATCTCTGCCTTAACTAGTATGTCCAGTAACAGTGTCAATTTCCCCAACATGGCTGGATCATCGCAATGCAGTGGGGGACTCACCTTTGGTGCTGGAGCTCTCCAATGTACTTCAGTTGGCCGATGA >Glyma17g05920.2 sequence type=CDS gene model=Glyma17g05920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCCATTCTTGTCGAATCATACTGATTCTATGTACAATTGTTCCCAAGTTGGTTGTAGTCATCCAATGGCTCATACTTCTTATCCCTGTGGTGATCCTTATTTTGGTAGTTCAATAGTTGCTTATGGACCACAGGCTATTAATCAACAAATGGTGCCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCAGTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCCAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAAGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCACGCATTGAACAGGGTTAGGGGATCTGGGGGACGCTTTCTTAGCGCCAAACAGCTGCCACAGTCTAATGCAGAACTAGTCACTGATGCCTATCAAAAGAAAGATGCATCAGAGGCAGAAAATCATCCCTCAAGCACCGGTGAAAATGCATCTATCACATTCACAGCCATCTCTGCCTTAACTAGTATGTCCAGTAACAGTGTCAATTTCCCCAACATGGCTGGATCATCGCAATGCAGTGGGGGACTCACCTTTGGTGCTGGAGCTCTCCAATGTACTTCAGTTGGCCGATGA
>Glyma17g05920.1 sequence type=predicted peptide gene model=Glyma17g05920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKPFLSNHTDSMYNCSQVGCSHPMAHTSYPCGDPYFGSSIVAYGPQAINQQMVPQMLGLASTRIALPVDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSAKQLPQSNAELVTDAYQKKDASEAENHPSSTGENASITFTAISALTSMSSNSVNFPNMAGSSQCSGGLTFGAGALQCTSVGR* >Glyma17g05920.2 sequence type=predicted peptide gene model=Glyma17g05920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKPFLSNHTDSMYNCSQVGCSHPMAHTSYPCGDPYFGSSIVAYGPQAINQQMVPQMLGLASTRIALPVDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSAKQLPQSNAELVTDAYQKKDASEAENHPSSTGENASITFTAISALTSMSSNSVNFPNMAGSSQCSGGLTFGAGALQCTSVGR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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