Glyma17g05920 - SoyBase

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Report for Sequence Feature Glyma17g05920

Feature Type:	gene_model
Chromosome:	Gm17
Start:	4174927
stop:	4180376
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g05920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G17590	AT	Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit A8 \| chr1:6050481-6051984 REVERSE LENGTH=328	SoyBase	E_val: 7.00E-38	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016602	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CCAAT-binding factor complex	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR12632	Panther	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	JGI		ISS
PTHR12632:SF5	Panther	TRANSCRIPTIONAL ACTIVATOR PHP2-RELATED	JGI		ISS
PF02045	PFAM	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	JGI		ISS
UniRef100_C6TG32	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TG32_SOYBN	SoyBase	E_val: 8.00E-157	ISS
UniRef100_I3TAV3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transcription factor Y subunit A3 n=1 Tax=Medicago truncatula RepID=I3TAV3_MEDTR	SoyBase	E_val: 2.00E-87	ISS

Expression Patterns of Glyma17g05920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g05920

Paralog	Evidence	Comments
Glyma13g16770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g05920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g051400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g05920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g05920

Limit To All Plant Sequences

>Glyma17g05920.2   sequence type=transcript   gene model=Glyma17g05920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTGTTGTTGGTATGAGTGGGTTTGATATTAGGGTGTTACTAGCGCGTGGAGGGAGTTGGAAATAGCACGTGGAATATGGGGCGCGTGAGGAAAGTATGAACAGTGAAGGGCGGCGGGGAGGTGAGTGCTGAAGAAGAAGGCCCAAGGGTTGAGGAAGGGTGTAAGTGGGGCCCTCAGAAAACATAAGCAAAGGTAGGAGCGGGTGTTGTGTTGTGAGAGACTATTTAATGGACTTTCTGTGTGCTTCTTCAACAAAGCCATAGAAATGAAAAATTAGAGAGTGAGAAGAGGAAGAAGAACATTCTAGAGGGAGAAACATTACACAACTGAACCCACAATTCTATTACTGTTTGCTTCAAAGGTATTCATTCTCTTTCTCTTATTTTTTCTCCACTCTCCAGTAGCCAGTAGCCACCTTTTCCCTTGCATCCTCCTAACCTTACTGTCGGATTCTATTGGATATAATTGAAGGTTTTGAGAACTAAGGCTGCAATACTGTATACATTCTACTCAAGGAATGGTCAATATCTGGAAATTTGCTATGTGGAAAGGTTAAATGAAGCCATTCTTGTCGAATCATACTGATTCTATGTACAATTGTTCCCAAGTTGGTTGTAGTCATCCAATGGCTCATACTTCTTATCCCTGTGGTGATCCTTATTTTGGTAGTTCAATAGTTGCTTATGGACCACAGGCTATTAATCAACAAATGGTGCCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCAGTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCCAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAAGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCACGCATTGAACAGGGTTAGGGGATCTGGGGGACGCTTTCTTAGCGCCAAACAGCTGCCACAGTCTAATGCAGAACTAGTCACTGATGCCTATCAAAAGAAAGATGCATCAGAGGCAGAAAATCATCCCTCAAGCACCGGTGAAAATGCATCTATCACATTCACAGCCATCTCTGCCTTAACTAGTATGTCCAGTAACAGTGTCAATTTCCCCAACATGGCTGGATCATCGCAATGCAGTGGGGGACTCACCTTTGGTGCTGGAGCTCTCCAATGTACTTCAGTTGGCCGATGAGAGGTGGAACCAATCAAAATCAACTTCACTGCTCTGGCAAATCATCCTTGGCTTAGTCACTTTACTTTCTGTCTTTCATGTGCTACAGAAATGTTGTCTTTTGGAACTGCTTTCCCATGGTTTTTGAAGTTGCTCTTGTTTCTATTGTTGAACTGGACCAGAAAGTTTGTGCTTGAAAATTTAACTTTTTTTATCTGTCCGTGCATGGTCCTTGCTTTGCCCAACCCCATCTCCAACGCCTATAGAACAAAAATGGAGTGAAGAAAATGAAAGTTTGCACATCACTGACATCAACAGGTATCTGGATGAAGTAAACACAACGTTTAATTTGGTATTACCGTACAAAAACACTATGCTAGTGTTTGGTATAGATGAATAAAAAAGAAAGAAAGTATAAGAAATGAAAATAGACGAAAGAGAAATGAAACAGAGAAAAATGGAGTAATTCTTCGATTTGACACACATTTGATGTGTCTTATCGTTTGCTCTCATGTTTCTTTAATTTCATGGGGATAACCTATGAAAGTGGGTGACGATTAGCATGGGAAAGACTAATTTGTCTCCGTTATGGGAGATGTTTGTGGTTTATAAAACATATTGATATCATATTGG

Coding sequences of Glyma17g05920

Limit To All Plant Sequences

>Glyma17g05920.1   sequence type=CDS   gene model=Glyma17g05920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCCATTCTTGTCGAATCATACTGATTCTATGTACAATTGTTCCCAAGTTGGTTGTAGTCATCCAATGGCTCATACTTCTTATCCCTGTGGTGATCCTTATTTTGGTAGTTCAATAGTTGCTTATGGACCACAGGCTATTAATCAACAAATGGTGCCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCAGTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCCAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAAGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCACGCATTGAACAGGGTTAGGGGATCTGGGGGACGCTTTCTTAGCGCCAAACAGCTGCCACAGTCTAATGCAGAACTAGTCACTGATGCCTATCAAAAGAAAGATGCATCAGAGGCAGAAAATCATCCCTCAAGCACCGGTGAAAATGCATCTATCACATTCACAGCCATCTCTGCCTTAACTAGTATGTCCAGTAACAGTGTCAATTTCCCCAACATGGCTGGATCATCGCAATGCAGTGGGGGACTCACCTTTGGTGCTGGAGCTCTCCAATGTACTTCAGTTGGCCGATGA

>Glyma17g05920.2   sequence type=CDS   gene model=Glyma17g05920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCCATTCTTGTCGAATCATACTGATTCTATGTACAATTGTTCCCAAGTTGGTTGTAGTCATCCAATGGCTCATACTTCTTATCCCTGTGGTGATCCTTATTTTGGTAGTTCAATAGTTGCTTATGGACCACAGGCTATTAATCAACAAATGGTGCCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCAGTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCCAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAAGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCACGCATTGAACAGGGTTAGGGGATCTGGGGGACGCTTTCTTAGCGCCAAACAGCTGCCACAGTCTAATGCAGAACTAGTCACTGATGCCTATCAAAAGAAAGATGCATCAGAGGCAGAAAATCATCCCTCAAGCACCGGTGAAAATGCATCTATCACATTCACAGCCATCTCTGCCTTAACTAGTATGTCCAGTAACAGTGTCAATTTCCCCAACATGGCTGGATCATCGCAATGCAGTGGGGGACTCACCTTTGGTGCTGGAGCTCTCCAATGTACTTCAGTTGGCCGATGA

Predicted protein sequences of Glyma17g05920

Limit To All Plant Sequences

>Glyma17g05920.1   sequence type=predicted peptide   gene model=Glyma17g05920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPFLSNHTDSMYNCSQVGCSHPMAHTSYPCGDPYFGSSIVAYGPQAINQQMVPQMLGLASTRIALPVDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSAKQLPQSNAELVTDAYQKKDASEAENHPSSTGENASITFTAISALTSMSSNSVNFPNMAGSSQCSGGLTFGAGALQCTSVGR*

>Glyma17g05920.2   sequence type=predicted peptide   gene model=Glyma17g05920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPFLSNHTDSMYNCSQVGCSHPMAHTSYPCGDPYFGSSIVAYGPQAINQQMVPQMLGLASTRIALPVDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSAKQLPQSNAELVTDAYQKKDASEAENHPSSTGENASITFTAISALTSMSSNSVNFPNMAGSSQCSGGLTFGAGALQCTSVGR*

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