SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G20540 | AT | Annotation by Michelle Graham. TAIR10: BREVIS RADIX-like 4 | chr5:6947943-6951760 FORWARD LENGTH=384 | SoyBase | E_val: 4.00E-169 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010089 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem development | SoyBase | N/A | ISS |
| GO:0044036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR22870 | Panther | REGULATOR OF CHROMOSOME CONDENSATION | JGI | ISS | |
| PTHR22870:SF36 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF08381 | PFAM | Disease resistance/zinc finger/chromosome condensation-like region | JGI | ISS | |
| UniRef100_B9RK26 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ran GTPase binding protein, putative n=1 Tax=Ricinus communis RepID=B9RK26_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MSC8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSC8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g05900 not represented in the dataset |
Glyma17g05900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g16796 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g051200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g05900.3 sequence type=transcript gene model=Glyma17g05900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTATGATTATCACTATTTACGACAAGCATAGGCACACAATTTCGAACCATTGCCCTTCCCAAAACAGCATTGTGAATCTATTTTGCTTTAATACGGTGAGGACTCCTCGTCTGTTAAAAACTTATATACGACTTTGGCATAAAGAACTAGTAGTAATATTCATGTAGTAACATCAAGAACGTGGCCTTCTACAGTTTTACTTGTTGGGTTGTAATTGAGCCTTCAGTACATAGACGCGTATGGGCCAAGCACAAACCCAAGAAAGTGAGCACTAAGTTCCTTGAACACTGAGCAAACAAGTATAAAAAACTAGAAAACACAGTAAGCGCGAGAGGCGCCACATGCAGTTAACATCCGGTAACCGGTAAGCCCGGAAGACAAAAAAAAGTGAAATCCACAGTAGCAGACAGCAGCACTCTTACACCATTATAGCTTCTACCGAACCAAGCAAAGCAAACCAAATAAAAAAAAACCAATAGAATCACACCCCTACCCTGCCGCCACCGGAGAACCCACCATTGACTCCGACACCGTGCCCCCTCTTCCCACTTTCTGAATTTCATTTTCCGCAATCCATTATTATTATTATAATAACATTCCATTCCTGTCTCCACCAGAGATTCTCTGATCTCGTGATTGAACTCGCACATTTATTAATTCAATTTGCTGCGCATGGTTCCTACTCGCAGCACCACCTCGGTTTTCGCGCTCTATTTTAAGCCTCCTTTTTTTTTCGTCACTCGCGGCTTCACGCTCAGGTGCACTGTAATTCTCATCTTTCTCTTTCAGATTCTGTAATGCGAGTGAAGTGTAGTGGAATCCGTGTTTTTTTTTTTTTGCAGAGATTTAATTTGATTAATTATTAAGAAGCGAAAATGCTTACGTGCATAGCTCGTCCAAAGAAACCTGATGAATCGGATCCGGACAACGCGACAAGCGCCGCTAAATCGCAAGCCATCAAATCCCTTACTTCTCAGATAAGGGATATGGCGTTGAAGGCTTCGGGAGCGTACAAGCATTGCGCACCGTGCACGGGGCCAGCGACGCAGGGGCGAGTTCGGAGCAACGCCACCGAGTTGGACGCGGATTCGGACCGGTTCCGGTGGTCGTACCGGAGAACGGGGAGCTCGAGCTCGACGACGACAAGGACGTGGGGGAAGGAGATGGAGGCGCGGCTGAAGGGGATTTCGAGCGGGGAGGGAACGCCGAACTCCGCCAGCGGACGGAGGGCGGAGCCGGTGGTGCTGTTCGTTGAAGAGAACGAGCCGAAGGAGTGGGTTGCGCAGGTGGAGCCTGGCGTTTTGATTACGTTCGTGTCGTTGCCACGTGGCGGGAACGATCTCAAGCGTATACGGTTCAGTCGAGAGATGTTCAATAAATGGCAAGCTCAAAGGTGGTGGGCAGAGAACTACGACAAGGTTATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTTCCTCTTCCAACGCCTCTAAGATCTGAAGATGAGAGCTCAAAGCTTGAATCAGTAGAAGAAAGCCCTGTAACACCTCCACTGAACAGTGAGCGGTTACCTCGTAATATGTACCGTCCAACAGGGATGGGAATGGGTTACTCATCCTCAGATTCCTTTGATCATCAGTCTATGCAATCTCGGCATTTCTATGACTCAAATGGTATGAACTCAACACCAAAAGTGTCCACCATTAGTGCGGCCAAGACAGAGATATCATCAATGGAGGCTTCTATCAGAAGTAGCTCATCCAGAGAGGCTGATCGCTCGGGTGATTTTTCAATCAGTAATGCTAGTGAATTGGAGACTGAATGGGTTGAACAGGATGAACCTGGGGTTTACATTACGATCAGAGCATTGCCAGGTGGTGCAAGAGAGCTCAAACGAGTCAGGTTCAGCCGAGAAAAGTTTGGGGAGATGCATGCTAGATTATGGTGGGAAGAGAACCGTGCCAGAATACATGAACAATACTTGTGAGTTGTGAGATTTTACAAAGGAGGTGGCTGCTGATGCTTTACAAAGTGTGGAGCTGGTGTTGCTTATTAAATTGTTCCATATTTGTTTTGTTATACTACTATTAAATCTCTTTATAGGTGAAGATGTCAGATGAGGTGCTACTTGCATCTCTGCCTTTTTTTGGGCTATTTACATGTGATCGGTTCAGGTTATATTCTCTTGAATGTGGGTGGTAAATATAGTTTCTAGTAAAGATACTAGCGGATCAAGAGCAGCAATGATTTACTTAAAAAGTTTGAGAAGTCTGGTGGGTGTAAATTCTATTACTATTCAAATTGGATAAAGAAGATGAATCCACTTTCATCATTTTGTTCCTACACTTCTAGGTCCATCACGCATCAGTTATGATGCACAAACATATGAAAATGCATGTCACCAGGTTTATTTGTTCCTGAGTTACTCTTTATTTGTTTTTTTTTTCTTTATTCTTTTTGCATACGTGTCTTAATATCTCTGCTCTTTCCGTTCCTGATTCTTCTGTACTCAGAATAAATATCATTGTAGTATTGTTTTGCGTCTTGTAGAACGAAATATTTTTTAGGAAATATAAACATAAGCTCCACGTTTCCAGTGGTAC
>Glyma17g05900.2 sequence type=CDS gene model=Glyma17g05900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTACGTGCATAGCTCGTCCAAAGAAACCTGATGAATCGGATCCGGACAACGCGACAAGCGCCGCTAAATCGCAAGCCATCAAATCCCTTACTTCTCAGATAAGGGATATGGCGTTGAAGGCTTCGGGAGCGTACAAGCATTGCGCACCGTGCACGGGGCCAGCGACGCAGGGGCGAGTTCGGAGCAACGCCACCGAGTTGGACGCGGATTCGGACCGGTTCCGGTGGTCGTACCGGAGAACGGGGAGCTCGAGCTCGACGACGACAAGGACGTGGGGGAAGGAGATGGAGGCGCGGCTGAAGGGGATTTCGAGCGGGGAGGGAACGCCGAACTCCGCCAGCGGACGGAGGGCGGAGCCGGTGGTGCTGTTCGTTGAAGAGAACGAGCCGAAGGAGTGGGTTGCGCAGGTGGAGCCTGGCGTTTTGATTACGTTCGTGTCGTTGCCACGTGGCGGGAACGATCTCAAGCGTATACGGTTCAGTCGAGAGATGTTCAATAAATGGCAAGCTCAAAGGTGGTGGGCAGAGAACTACGACAAGGTTATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTTCCTCTTCCAACGCCTCTAAGATCTGAAGATGAGAGCTCAAAGCTTGAATCAGTAGAAGAAAGCCCTGTAACACCTCCACTGAACAGTGAGCGGTTACCTCGTAATATGTACCGTCCAACAGGGATGGGAATGGGTTACTCATCCTCAGATTCCTTTGATCATCAGTCTATGCAATCTCGGCATTTCTATGACTCAAATGGTATGAACTCAACACCAAAAGTGTCCACCATTAGTGCGGCCAAGACAGAGATATCATCAATGGAGGCTTCTATCAGAAGTAGCTCATCCAGAGAGGCTGATCGCTCGGGTGATTTTTCAATCAGTAATGCTAGTGAATTGGAGACTGAATGGGTTGAACAGGATGAACCTGGGGTTTACATTACGATCAGAGCATTGCCAGGTGGTGCAAGAGAGCTCAAACGAGTCAGGTTCAGCCGAGAAAAGTTTGGGGAGATGCATGCTAGATTATGGTGGGAAGAGAACCGTGCCAGAATACATGAACAATACTTGTGA >Glyma17g05900.3 sequence type=CDS gene model=Glyma17g05900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTACGTGCATAGCTCGTCCAAAGAAACCTGATGAATCGGATCCGGACAACGCGACAAGCGCCGCTAAATCGCAAGCCATCAAATCCCTTACTTCTCAGATAAGGGATATGGCGTTGAAGGCTTCGGGAGCGTACAAGCATTGCGCACCGTGCACGGGGCCAGCGACGCAGGGGCGAGTTCGGAGCAACGCCACCGAGTTGGACGCGGATTCGGACCGGTTCCGGTGGTCGTACCGGAGAACGGGGAGCTCGAGCTCGACGACGACAAGGACGTGGGGGAAGGAGATGGAGGCGCGGCTGAAGGGGATTTCGAGCGGGGAGGGAACGCCGAACTCCGCCAGCGGACGGAGGGCGGAGCCGGTGGTGCTGTTCGTTGAAGAGAACGAGCCGAAGGAGTGGGTTGCGCAGGTGGAGCCTGGCGTTTTGATTACGTTCGTGTCGTTGCCACGTGGCGGGAACGATCTCAAGCGTATACGGTTCAGTCGAGAGATGTTCAATAAATGGCAAGCTCAAAGGTGGTGGGCAGAGAACTACGACAAGGTTATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTTCCTCTTCCAACGCCTCTAAGATCTGAAGATGAGAGCTCAAAGCTTGAATCAGTAGAAGAAAGCCCTGTAACACCTCCACTGAACAGTGAGCGGTTACCTCGTAATATGTACCGTCCAACAGGGATGGGAATGGGTTACTCATCCTCAGATTCCTTTGATCATCAGTCTATGCAATCTCGGCATTTCTATGACTCAAATGGTATGAACTCAACACCAAAAGTGTCCACCATTAGTGCGGCCAAGACAGAGATATCATCAATGGAGGCTTCTATCAGAAGTAGCTCATCCAGAGAGGCTGATCGCTCGGGTGATTTTTCAATCAGTAATGCTAGTGAATTGGAGACTGAATGGGTTGAACAGGATGAACCTGGGGTTTACATTACGATCAGAGCATTGCCAGGTGGTGCAAGAGAGCTCAAACGAGTCAGGTTCAGCCGAGAAAAGTTTGGGGAGATGCATGCTAGATTATGGTGGGAAGAGAACCGTGCCAGAATACATGAACAATACTTGTGA
>Glyma17g05900.2 sequence type=predicted peptide gene model=Glyma17g05900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLTCIARPKKPDESDPDNATSAAKSQAIKSLTSQIRDMALKASGAYKHCAPCTGPATQGRVRSNATELDADSDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRAEPVVLFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNRQAFPLPTPLRSEDESSKLESVEESPVTPPLNSERLPRNMYRPTGMGMGYSSSDSFDHQSMQSRHFYDSNGMNSTPKVSTISAAKTEISSMEASIRSSSSREADRSGDFSISNASELETEWVEQDEPGVYITIRALPGGARELKRVRFSREKFGEMHARLWWEENRARIHEQYL* >Glyma17g05900.3 sequence type=predicted peptide gene model=Glyma17g05900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLTCIARPKKPDESDPDNATSAAKSQAIKSLTSQIRDMALKASGAYKHCAPCTGPATQGRVRSNATELDADSDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRAEPVVLFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNRQAFPLPTPLRSEDESSKLESVEESPVTPPLNSERLPRNMYRPTGMGMGYSSSDSFDHQSMQSRHFYDSNGMNSTPKVSTISAAKTEISSMEASIRSSSSREADRSGDFSISNASELETEWVEQDEPGVYITIRALPGGARELKRVRFSREKFGEMHARLWWEENRARIHEQYL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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