Report for Sequence Feature Glyma17g05800
Feature Type: gene_model
Chromosome: Gm17
Start: 4086746
stop: 4089700
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g05800
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G13960 AT
Annotation by Michelle Graham. TAIR10: growth-regulating factor 5 | chr3:4608526-4610160 FORWARD LENGTH=397
SoyBase E_val: 3.00E-50 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0009793 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy
SoyBase N/A ISS
GO:0009845 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed germination
SoyBase N/A ISS
GO:0009909 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of flower development
SoyBase N/A ISS
GO:0009965 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis
SoyBase N/A ISS
GO:0010162 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed dormancy process
SoyBase N/A ISS
GO:0016570 GO-bp
Annotation by Michelle Graham. GO Biological Process: histone modification
SoyBase N/A ISS
GO:0048366 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf development
SoyBase N/A ISS
GO:0048449 GO-bp
Annotation by Michelle Graham. GO Biological Process: floral organ formation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016818 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
SoyBase N/A ISS
PF08879 PFAM
WRC
JGI ISS
PF08880 PFAM
QLQ
JGI ISS
UniRef100_I1MSB6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MSB6_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q6ZIK5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Growth-regulating factor 4 n=1 Tax=Oryza sativa Japonica Group RepID=GRF4_ORYSJ
SoyBase E_val: 6.00E-53 ISS
Expression Patterns of Glyma17g05800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g05800
Paralog Evidence Comments
Glyma13g16924 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g05800 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g050200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g05800
Transcripts of Glyma17g05800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g05800.2 sequence type=transcript gene model=Glyma17g05800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GGGCTGCCAGAGAGGCAGCTTAGTCGCAGAAGCAGTAGCAACAGAGAGGTGCAGTCATAATAGTAGGAGCTGAGATAGAGAGAGAAAGAGAGTGTGCATTGGCATGCAGCTTTGTAATCAGAACCATTAGTTTATTACTGTAACACAATGGTCCCTGAAATAAATATACCTACTCTACTCCAAAGTAACAAACAAGAAGCAATAACACTCAAAAACTCCTCTCTTTTCCTCTCCTCACATTTCTCCCTGAACCTCTCCCCACATTACTGCACTGTGAGGTGTCTGAAATAGAATAGCTTCTTCTGTTTCATTTGTTACTATATCACCCACCAGCACCAGCCTTTGTGCTAGCTCTTTGATTCCTTTTTACTCTTTTTTCGTTTTTTTTTTCCTGTTCTTTCCCTTTCCCCTCTGCTCGATGATGAATGGAAGGAACGTTGACACAAACAGGTTCCCCTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCCCTCATCTACAAATACATGGCTTCAGGTATTTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACAACCCACTTGGACTCCTCAAGACTCTTGCCTCAACACTTTGGGTGGAATTATTTGCCAATGGGATTGGGGAGAAAAATAGACCCAGAGCCAGGGAGGTGTAGAAGAACAGATGGGAAAAAATGGAGGTGCTCAAAGGAGGCGTATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAATGACAGCAGCAACAAACACAGATGCCTCAACCCCAACAACAATCTTATCAATCACCAAAAACAGTCCTGTACTCTTCCCAACCACTCATTCTCTGTCTCATGACACTTACCATCATCATCACCATCATCACTCTCACCCTCAGCAACATTCCTCCCACTCCTTCCTCTATCATTCTTCGAGGCCCTCTTCCGGTGGTGTTTCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCATGCTCTCAGAATAACAACAACACTGACTGCAGGTATGTGTATGGACTAAAAGAGGAGGTGGATGAGCATGCCTTTTTCACAGAACCTTCTGGAACTATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACACCACTGACTATAAGCTCCTCTTCCTCTTCAAAACAGAGGAGTTGCTCTGGTTTATCCAATGACAGCAATGAGTACTCCTACTTGCAACTTCAGAGCCTCAGTGGCAACAACTCAAAGCATCCACAGCAAGATCAAGGTTGCTACATATCAGGCAGTGATATCAAGTGCGAAACATTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTCGATGAATGGCCTCCCAAAAGCAGAGGATCATGGCTTGATTTGGATGATAAATCATCCACAACCCAGCTTTCAATTTCCATTCCCACTTCTACTCATGATTTTGCAACTTTCAGTTCAACAACCCAACGAGATGGTTGAGTTTAGCTTTCAATAGTGGGGTCCTTCAGTCCTTGTACTTGAATCAAAGGCCAATAATGTACTTACATGGTGGGGTTCACATTATGTTGTGATTTGTGAGATCTCTCTTTAATTGCTCCCCCTTTTTCCATCTGTTTTCTAAGTGTTGTTGAAGCTGATTTGTGTTTCCATGGAGGGATCCAATGTGTTTGTGTGCTAGTATTTGCTTTCAATGTTGTGTTCTTTCTACTCTCTCATTTTGTGTTCTTTGTGGTTTGAGCTAACACTCAAAGACACGTCCTTTTTTGCTTGTTCATCATTCTCAGCTGAGTACAATATTATTATTTTGGATGCTTTTTTTATGGTCCCAGGGCAGGGATTTGCTTGTTTGTCACTTCTGAAACTCTTTGAATATGGTTGGTAGCATTATTGAAGGTTAAACAAAAACTAATGAGGGGAGACACACATGATTAAGAAACAAGGTTTGACTGTACTAACAAAAAGAAAAGGGTCTTGCTATTGCCCAAAGTGATTTTGTTATCGTCGTTTTATTGAATTTTGGTTGGTGTTT
Coding sequences of Glyma17g05800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g05800.1 sequence type=CDS gene model=Glyma17g05800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCAGGTATTTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACAACCCACTTGGACTCCTCAAGACTCTTGCCTCAACACTTTGGGTGGAATTATTTGCCAATGGGATTGGGGAGAAAAATAGACCCAGAGCCAGGGAGGTGTAGAAGAACAGATGGGAAAAAATGGAGGTGCTCAAAGGAGGCGTATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAATGACAGCAGCAACAAACACAGATGCCTCAACCCCAACAACAATCTTATCAATCACCAAAAACAGTCCTGTACTCTTCCCAACCACTCATTCTCTGTCTCATGACACTTACCATCATCATCACCATCATCACTCTCACCCTCAGCAACATTCCTCCCACTCCTTCCTCTATCATTCTTCGAGGCCCTCTTCCGGTGGTGTTTCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCATGCTCTCAGAATAACAACAACACTGACTGCAGGTATGTGTATGGACTAAAAGAGGAGGTGGATGAGCATGCCTTTTTCACAGAACCTTCTGGAACTATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACACCACTGACTATAAGCTCCTCTTCCTCTTCAAAACAGAGGAGTTGCTCTGGTTTATCCAATGACAGCAATGAGTACTCCTACTTGCAACTTCAGAGCCTCAGTGGCAACAACTCAAAGCATCCACAGCAAGATCAAGGTTGCTACATATCAGGCAGTGATATCAAGTGCGAAACATTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTCGATGAATGGCCTCCCAAAAGCAGAGGATCATGGCTTGATTTGGATGATAAATCATCCACAACCCAGCTTTCAATTTCCATTCCCACTTCTACTCATGATTTTGCAACTTTCAGTTCAACAACCCAACGAGATGGTTGA
>Glyma17g05800.2 sequence type=CDS gene model=Glyma17g05800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGAATGGAAGGAACGTTGACACAAACAGGTTCCCCTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCCCTCATCTACAAATACATGGCTTCAGGTATTTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACAACCCACTTGGACTCCTCAAGACTCTTGCCTCAACACTTTGGGTGGAATTATTTGCCAATGGGATTGGGGAGAAAAATAGACCCAGAGCCAGGGAGGTGTAGAAGAACAGATGGGAAAAAATGGAGGTGCTCAAAGGAGGCGTATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAATGACAGCAGCAACAAACACAGATGCCTCAACCCCAACAACAATCTTATCAATCACCAAAAACAGTCCTGTACTCTTCCCAACCACTCATTCTCTGTCTCATGACACTTACCATCATCATCACCATCATCACTCTCACCCTCAGCAACATTCCTCCCACTCCTTCCTCTATCATTCTTCGAGGCCCTCTTCCGGTGGTGTTTCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCATGCTCTCAGAATAACAACAACACTGACTGCAGGTATGTGTATGGACTAAAAGAGGAGGTGGATGAGCATGCCTTTTTCACAGAACCTTCTGGAACTATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACACCACTGACTATAAGCTCCTCTTCCTCTTCAAAACAGAGGAGTTGCTCTGGTTTATCCAATGACAGCAATGAGTACTCCTACTTGCAACTTCAGAGCCTCAGTGGCAACAACTCAAAGCATCCACAGCAAGATCAAGGTTGCTACATATCAGGCAGTGATATCAAGTGCGAAACATTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTCGATGAATGGCCTCCCAAAAGCAGAGGATCATGGCTTGATTTGGATGATAAATCATCCACAACCCAGCTTTCAATTTCCATTCCCACTTCTACTCATGATTTTGCAACTTTCAGTTCAACAACCCAACGAGATGGTTGA
Predicted protein sequences of Glyma17g05800
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g05800.1 sequence type=predicted peptide gene model=Glyma17g05800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASGISIPPDLLFTIKRTTHLDSSRLLPQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPMTAATNTDASTPTTILSITKNSPVLFPTTHSLSHDTYHHHHHHHSHPQQHSSHSFLYHSSRPSSGGVSLSFQDNSAPLFLDTASCSQNNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRSCSGLSNDSNEYSYLQLQSLSGNNSKHPQQDQGCYISGSDIKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSTHDFATFSSTTQRDG*
>Glyma17g05800.2 sequence type=predicted peptide gene model=Glyma17g05800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMNGRNVDTNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTTHLDSSRLLPQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPMTAATNTDASTPTTILSITKNSPVLFPTTHSLSHDTYHHHHHHHSHPQQHSSHSFLYHSSRPSSGGVSLSFQDNSAPLFLDTASCSQNNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRSCSGLSNDSNEYSYLQLQSLSGNNSKHPQQDQGCYISGSDIKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSTHDFATFSSTTQRDG*