Report for Sequence Feature Glyma17g05740
Feature Type: gene_model
Chromosome: Gm17
Start: 4035466
stop: 4039997
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g05740
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G06040 AT
Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink). | chr2:2352333-2355419 REVERSE LENGTH=762
SoyBase E_val: 9.00E-172 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG1947
KOG
Leucine rich repeat proteins, some proteins contain F-box
JGI ISS
PTHR23125 Panther
F-BOX/LEUCINE RICH REPEAT PROTEIN
JGI ISS
PTHR23125:SF2 Panther
gb def: Hypothetical protein At2g06040
JGI ISS
UniRef100_B9RRB4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Rad7, putative n=1 Tax=Ricinus communis RepID=B9RRB4_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1MSA9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MSA9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g05740
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g05740
Paralog Evidence Comments
Glyma13g16983 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g05740 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g049600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g05740
Coding sequences of Glyma17g05740
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g05740.1 sequence type=CDS gene model=Glyma17g05740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCACCACTAATCCAATTCCAAATCTCAATTCCCCACCCTCCCATCCTCCCAATTTCGATTCCGATTCCGATTCCGACATTGACGCCCTCATCGACAGTTTTTTCGAACAACCCTCGCCCTCTCTCCCTCACTACGGATCCAACGCCAACACCACTCTCAAGAGAGGAATTGATGTCCCCTCCGTTGATTATTTCGACACTGCCATATCCATCAAGCGCGGCAGGATTAGCAATGCCGCCACCCACGGCTCTGATGATCAACACCACGCCACCTTTGAAATTCAAAACCCTTCTCCTCCTCCTCCTCTCTCCCAGGATCCTGGAGGACCCATCGCTGATCACAATCACGGAGGAGGAGGAGGAGAAGATCAGCAAGGGAAACGGCCAGTGTTTGAAATTGATTTTATATCTAAGGCTCTTCGTGAAGCTGAATTAGGTTTAGCGCTGAATTCTCACGATAACGCCGACGACTTTGACGACGACGACATGGAACCTAAGAATGAGAATCATGATTTACACTATGTACCAATGAGTTTTTACAGAAGGAATAGGAACATGGAACGTTTCCGAGTGATAGCGAAGAGAAACGCCACTCACTATGCTCGGTTCGACGACTCGGAGGTTGGAGATGAAGGGACATCATTGTATCTTAATCCTCAAGGAAACATTGACGATTCCGAAACTCCATTTTCGATTGCCATGAAGGCGATCAAGGATCGAGCTATGAAGAAGAAGGTGTGTGATGCCTGGGTTCCCAAGAGGAATCCACAAGGGGGGGAGAAGAGGTTTTTTCTGGTGCCTTCTCTTCAAGAACTGTGCCTTGAAATTCTTGCGAATAATGCTGATGCAATGGTTTCGCTTGAGGGTGTACCAGATGAGCTGAGACGCAAGCTTTCCAAGCTGCTCTGTGACTCGAGAAAGATGAATAGTCGATTTCTTGAGCTTCTTCTCAGTGGCTCTCCCACTGAGATTCGGATAAAAGACTGTTCTTGGTTGACGGAGGAACAGTTTGCCAAATCTTTTCAAACGTGTGACACTACAAGATTGGAGGTGCTGCAGCTTGACCAGTGTGGAAGGTGTATACCTGATTATGCATTACTTGGTACTTTGAGACAGTCACCAAGGTGGTTGCCAAAGTTAATTACCCTGTCCCTCAGTGGTGCGTGCCGCCTGTCAGATAAGGGGTTGCATGTGCTAGTTTCTTCTGCACCAGCACTGAGATCCATTAACCTAAGCCAGTGCTCCCTTCTCTCATCTGCCAGTATTAATATTTTGGCTGATTCATTGGGATCCCTTTTGAAAGAGTTGTATCTAGATGATTGCCTAATGATTGATGCTGCACAAATTGTGCCAGGACTGAAGAAACTTGAACATTTAGAGGTGTTGTCATTGGCTGGCATTCAAACTGTCTCCGATGAATTTATCAAGAATTACATCATTGCATGTGGTCACAACATGAAGGAGCTTATTTTCAAAGACTGTAGAAAATTGACTGATGCATCGATAAAAGTCATTGCTGAACACTGTCCTGGGTTGTGTGCACTTGATCTTATGAACTTGGACAAATTGACAGATTTATCCTTAGGATATCTTACAAATAGTTGTCAAGCACTTCGTACATTGAAGCTCTGCCGCAATCTATTCAGTGATGAAGCAATTGCTGCATTCTTGGAGATTACTGGAGAGTCCTTGAAAGAACTTTCACTTAACAATATTAAGAAGGTTGGCCACCACACAACCATATCACTTGCGAGGCATGCAAAAAATTTGCATACCCTAGATCTATCTTGGTGCCGGAATTTGACAGACAACGAGTTGGGTTTCATTGTAGATAGCTGCTTCTCACTGAGGTTGCTTAAACTTTTTGGATGCTCACTGGTGACAGATGTTTTTCTGAACGGGCACTCAAACCCAGAGATTCAGATCCTTGGATTGAAGATGTCCCCTTTATTGCAAAATGTCAAAGTGCCTGAACCCTATCAAGGTCCCTTGCGTTATTCACCAGTTTCAGTAGATTTGGTATAA
Predicted protein sequences of Glyma17g05740
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g05740.1 sequence type=predicted peptide gene model=Glyma17g05740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATTNPIPNLNSPPSHPPNFDSDSDSDIDALIDSFFEQPSPSLPHYGSNANTTLKRGIDVPSVDYFDTAISIKRGRISNAATHGSDDQHHATFEIQNPSPPPPLSQDPGGPIADHNHGGGGGEDQQGKRPVFEIDFISKALREAELGLALNSHDNADDFDDDDMEPKNENHDLHYVPMSFYRRNRNMERFRVIAKRNATHYARFDDSEVGDEGTSLYLNPQGNIDDSETPFSIAMKAIKDRAMKKKVCDAWVPKRNPQGGEKRFFLVPSLQELCLEILANNADAMVSLEGVPDELRRKLSKLLCDSRKMNSRFLELLLSGSPTEIRIKDCSWLTEEQFAKSFQTCDTTRLEVLQLDQCGRCIPDYALLGTLRQSPRWLPKLITLSLSGACRLSDKGLHVLVSSAPALRSINLSQCSLLSSASINILADSLGSLLKELYLDDCLMIDAAQIVPGLKKLEHLEVLSLAGIQTVSDEFIKNYIIACGHNMKELIFKDCRKLTDASIKVIAEHCPGLCALDLMNLDKLTDLSLGYLTNSCQALRTLKLCRNLFSDEAIAAFLEITGESLKELSLNNIKKVGHHTTISLARHAKNLHTLDLSWCRNLTDNELGFIVDSCFSLRLLKLFGCSLVTDVFLNGHSNPEIQILGLKMSPLLQNVKVPEPYQGPLRYSPVSVDLV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
