Report for Sequence Feature Glyma17g05630
Feature Type: gene_model
Chromosome: Gm17
Start: 3942742
stop: 3944916
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g05630
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G05910 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF567) | chr2:2258512-2259376 REVERSE LENGTH=191
SoyBase E_val: 1.00E-72 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF04525 PFAM
Protein of unknown function (DUF567)
JGI ISS
UniRef100_C6SZN5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZN5_SOYBN
SoyBase E_val: 2.33E-156 ISS
UniRef100_Q01J32 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0140O07.11 protein n=3 Tax=Oryza sativa RepID=Q01J32_ORYSA
SoyBase E_val: 1.00E-62 ISS
Expression Patterns of Glyma17g05630
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g05630
Paralog Evidence Comments
Glyma13g17090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g05630 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g048500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g05630
Coding sequences of Glyma17g05630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g05630.1 sequence type=CDS gene model=Glyma17g05630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATTGCGAAGACAAACACGATTATGCCTATCATTGGCAAACTGTACTGTTCATCGTCTGAGACGGTGCTTGTGGTGAGGAGGAGGCCACACGTGGTGAATGGTGGGGGTTTTGTAGTCATGGATTGTAGTGCCCAGAGGGTTGTGTTCAGGGTCGATGGTTGTGGTGTTCGTGGCAAAAAGGGAGACTTGATTCTAAGAGAAGGAGATGGAGACGCTTTGCTTCTCATGCGTCGAATGGGAGGCATGGTTGAGGCCTTAAGCATTTACAAGAAGTGGAAATGCTACAGCTTGGACTACGAAGGATCTCGGAAGCTGGTTTTCAGCTTGAGAGAACCCAATTCTTGTTTGGTTAAGAACAATGCAATCAGAATCTTCACTAGGAACAGAGGCCGTGACTTTAAGATCAGTGGCTGTTTCCCGGATAAGTGTTGTAGCATTGTTGACTCTAAAGGCAACGAGGTAGCACAGGTGGGGATGATGAAGGAAGTGGAGGAATTGATTGAAAGCAAGGATTTGTACCATGTGGTGGTGAATCCTGGGATGGATCAAGCTTTTGTTTTCGGAGTCATCGCTGTCCTTGATTACATTTATGGCGAATCTACCCACCGCTAA
Predicted protein sequences of Glyma17g05630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g05630.1 sequence type=predicted peptide gene model=Glyma17g05630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIAKTNTIMPIIGKLYCSSSETVLVVRRRPHVVNGGGFVVMDCSAQRVVFRVDGCGVRGKKGDLILREGDGDALLLMRRMGGMVEALSIYKKWKCYSLDYEGSRKLVFSLREPNSCLVKNNAIRIFTRNRGRDFKISGCFPDKCCSIVDSKGNEVAQVGMMKEVEELIESKDLYHVVVNPGMDQAFVFGVIAVLDYIYGESTHR*