Glyma17g05580 - SoyBase

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Report for Sequence Feature Glyma17g05580

Feature Type:	gene_model
Chromosome:	Gm17
Start:	3912720
stop:	3918355
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g05580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19110	AT	Annotation by Michelle Graham. TAIR10: inter-alpha-trypsin inhibitor heavy chain-related \| chr1:6602270-6605766 FORWARD LENGTH=754	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009690	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR10338	Panther	VON WILLEBRAND FACTOR, TYPE A DOMAIN CONTAINING	JGI		ISS
PTHR10338:SF8	Panther	INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN	JGI		ISS
PF00092	PFAM	von Willebrand factor type A domain	JGI		ISS
UniRef100_G7IGH7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Inter-alpha-trypsin inhibitor heavy chain H3 n=1 Tax=Medicago truncatula RepID=G7IGH7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MS95	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MS95_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g05580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g05580

Paralog	Evidence	Comments
Glyma13g17130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g05580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g048100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g05580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g05580

Limit To All Plant Sequences

>Glyma17g05580.2   sequence type=transcript   gene model=Glyma17g05580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCACCTCCACCTTTCCTTTCTTGTTATATATAAATCCGAAATGCAAATTTACCATTCTGCTTCTTCTGCACTCTTCTTCACATTTCATTTTCTTTACTTCTTTAATGGCCCAGGATTTCTCCAAAGCTGTTGATGACGGCCTCAAGCTCTCCAAACGCATATACTTCGGGAAGGACAGGGCGGTGGCACCTCCTAAACCTCCGCCGCCGATGACGCGCTCCGCCACCGCGTTTCTCCCCTCGGCGCCGATGGTCTACGCGGTGATCTCCGATCCAGGGATCGTGGACAACCCCGACATCCCGAGCTACCAACCGCACGTGTACGGAAGGTGTGATCCTCCAGCGTTGATTCCGCTTCAGATGAACGCTATTCAGATGGAAGCTGATTGCTACCACGAAACCGCGTTTATCACAGTCTCCGGCACTTGGAGACTCCACTGCGTCATGGGAAGCCGCTCCTGCGATTGCCGCATCGCTGTTCCCGTCAGCCACCAGATTTTATTTCACAGGGTTCAATTCTAGGTGTTGAGGTCAGCGTTTCTAGAAAATCATATTCTACTCAACTGGTTGTAATGGAAGATGACAATGGGAACCAAAACGCCTCGCCACCTCAAAACGGAGGGTTTCTCATCCCGGATATATTTACTTTAACTATACCGCAGATTGATGGAGGTTCCAATTTGTCGATCAAAGTTCGGTGGTCTCAGAAAATAGTGTTCTCCAAAGGCCAGTTCTCTTTGAATGTGCCGTTTACCTTTCCTGATTTCGTTAACCCTGCGGGGAAGAAAATATCTAAAAGAGAAAAGATACAAATTAATGTGGATGCTGTTACTGGAGGTGAGCTTCTGTGCAAGACATTAAGCCACCCACTGAAGGAAGTGAGGCGTCATGTTGGGAGCATGGGCTTCTTATATGATTCCGATGTTCTTTCATGGTCTAAAGTTGATTTTAGCTTTTCATATGCTGTTTCTTCAAGTCATATAACTGGTGGTGTTCTTTTGGAATCTGCATCTGTGCATGATTTTGATCAAAGAGAGATGTTCTACATGTATCTTTCTACAGGAGATATTCAGAGTGACAAGGTATTCAAAAAGGACATAATATTCATTATTGACATCAGCGGTAGTATGCGGGGAAAGCTAATTGAAGACACAAAGAATGCACTATTGACTGCTCTCTCTAAGCTTAATCAGGCTGATTCATTTAATATTATAGCCTTTAATGGAGAGACTTATCTATTTTCCAAAACGATGGAATTGGCTTCCGGGGATGCTGTTGAAAGGGCCACTGAGTGGATTAACACGAACTTTGTTGCTGGGGGTGGTACAAATATTTCTCATCCATTAAACACGGCAATAGAGATGCTATCCAATATTCAAAGTTCAGTTCCAATAATTTTCCTAGTTACAGATGGAACTGTTGAAGATGAAAGACAAATTTGTGCTATGGTAAAGAATCGTATGATCAATGGAGAGTCAATATGCCCTCGAATTTACACTTTTGGCATTGGTTCGTTCTGCAATCATTATTTCTTGCGAATGCTCGCAATGATTGGTAGGGGCCAATATGATGCTGCGTTGGATGTAGATTTGATTGAACCTCGAATGCTGACATTGTTTGGCAAAGCTTCATCTCTCATTCTTGCAAATATCAAAATGGACACATTGGATGATCTTGATGACCTCGAGGTATACCCTCCTCATATTCCAGATCTTTCATCAGAGGGTCCATTGATTTTATCTGGGAGATACAGGGGAAATTTTCCCAAAACTCTTAAAATCGAAGGTATCTTGGCTGATTTCAGTAATTTTGTAGTAGATATGAAGATACAAAATGCTAAGGACATTCCTGTGCAAAAGATTTCTGCAAGAGATCAAATAGAGCATCTTACTGCCCAAGCATGGCTCATGGAAAATAAACAACTAGAACAGAAGGTTGCAAAATTGAGCTTGCAGACTGGCTTTATGTCTGAGTATACACGAATGATAATACTTGAGACTGATCATCTAAAGAAAGTCAAGGAATCAGCCGGAACGAAAGAAGCGTCAAAAAAGAGCCATCCTCAGTATGAGGCACCCGTCCAAGGCCAGAGAATGATTTTACTACCCCATTTGGGTATTGGCTTTGGCAACTTAACTGCAACTGCTGAAAATACTCCTCCAGGATTTGAATCAAAATTTCCTGAAGTGCCGGAAATCTTTAAGGCGGCCACAAATTGTTGTGAAACCTTGTGCAGTTACTGTTGTTGCATGTGCTGCATCCAGTGTTGTACCCGGATAAACAACCAATGTGCAACTGCATTGACACAACTCTGCATTGGTCTAGGATGCTTCGGCTGCATCACATGTTGTTCAGATATATGCTGTTCTGGAAACGAAGGCTGAAATATCAATTTTGTTGTATTTTACTGCATATAGAAATCACTGTTTATATAGTGTTGTCATTTTGGGAATGTATATGAGCAAGTCGTCTATTGTGTTACGGGGTGATTTCCATAGTAATATTGTATAGTTTTTTCTGATGATAATCGTGCAAGTTTAAACTTTGCAATAGATATACCATTGTATTAACAAAGAGGAAAGTGAACTATACAAAAACCAGTTTTATCTGCCGCCAAAGA

Coding sequences of Glyma17g05580

Limit To All Plant Sequences

>Glyma17g05580.1   sequence type=CDS   gene model=Glyma17g05580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCAGGATTTCTCCAAAGCTGTTGATGACGGCCTCAAGCTCTCCAAACGCATATACTTCGGGAAGGACAGGGCGGTGGCACCTCCTAAACCTCCGCCGCCGATGACGCGCTCCGCCACCGCGTTTCTCCCCTCGGCGCCGATGGTCTACGCGGTGATCTCCGATCCAGGGATCGTGGACAACCCCGACATCCCGAGCTACCAACCGCACGTGTACGGAAGGTGTGATCCTCCAGCGTTGATTCCGCTTCAGATGAACGCTATTCAGATGGAAGCTGATTGCTACCACGAAACCGCGTTTATCACAGTCTCCGGCACTTGGAGACTCCACTGCGTCATGGGAAGCCGCTCCTGCGATTGCCGCATCGCTGTTCCCGTCAGCCACCAGGGTTCAATTCTAGGTGTTGAGGTCAGCGTTTCTAGAAAATCATATTCTACTCAACTGGTTGTAATGGAAGATGACAATGGGAACCAAAACGCCTCGCCACCTCAAAACGGAGGGTTTCTCATCCCGGATATATTTACTTTAACTATACCGCAGATTGATGGAGGTTCCAATTTGTCGATCAAAGTTCGGTGGTCTCAGAAAATAGTGTTCTCCAAAGGCCAGTTCTCTTTGAATGTGCCGTTTACCTTTCCTGATTTCGTTAACCCTGCGGGGAAGAAAATATCTAAAAGAGAAAAGATACAAATTAATGTGGATGCTGTTACTGGAGGTGAGCTTCTGTGCAAGACATTAAGCCACCCACTGAAGGAAGTGAGGCGTCATGTTGGGAGCATGGGCTTCTTATATGATTCCGATGTTCTTTCATGGTCTAAAGTTGATTTTAGCTTTTCATATGCTGTTTCTTCAAGTCATATAACTGGTGGTGTTCTTTTGGAATCTGCATCTGTGCATGATTTTGATCAAAGAGAGATGTTCTACATGTATCTTTCTACAGGAGATATTCAGAGTGACAAGGTATTCAAAAAGGACATAATATTCATTATTGACATCAGCGGTAGTATGCGGGGAAAGCTAATTGAAGACACAAAGAATGCACTATTGACTGCTCTCTCTAAGCTTAATCAGGCTGATTCATTTAATATTATAGCCTTTAATGGAGAGACTTATCTATTTTCCAAAACGATGGAATTGGCTTCCGGGGATGCTGTTGAAAGGGCCACTGAGTGGATTAACACGAACTTTGTTGCTGGGGGTGGTACAAATATTTCTCATCCATTAAACACGGCAATAGAGATGCTATCCAATATTCAAAGTTCAGTTCCAATAATTTTCCTAGTTACAGATGGAACTGTTGAAGATGAAAGACAAATTTGTGCTATGGTAAAGAATCGTATGATCAATGGAGAGTCAATATGCCCTCGAATTTACACTTTTGGCATTGGTTCGTTCTGCAATCATTATTTCTTGCGAATGCTCGCAATGATTGGTAGGGGCCAATATGATGCTGCGTTGGATGTAGATTTGATTGAACCTCGAATGCTGACATTGTTTGGCAAAGCTTCATCTCTCATTCTTGCAAATATCAAAATGGACACATTGGATGATCTTGATGACCTCGAGGTATACCCTCCTCATATTCCAGATCTTTCATCAGAGGGTCCATTGATTTTATCTGGGAGATACAGGGGAAATTTTCCCAAAACTCTTAAAATCGAAGGTATCTTGGCTGATTTCAGTAATTTTGTAGTAGATATGAAGATACAAAATGCTAAGGACATTCCTGTGCAAAAGATTTCTGCAAGAGATCAAATAGAGCATCTTACTGCCCAAGCATGGCTCATGGAAAATAAACAACTAGAACAGAAGGTTGCAAAATTGAGCTTGCAGACTGGCTTTATGTCTGAGTATACACGAATGATAATACTTGAGACTGATCATCTAAAGAAAGTCAAGGAATCAGCCGGAACGAAAGAAGCGTCAAAAAAGAGCCATCCTCAGTATGAGGCACCCGTCCAAGGCCAGAGAATGATTTTACTACCCCATTTGGGTATTGGCTTTGGCAACTTAACTGCAACTGCTGAAAATACTCCTCCAGGATTTGAATCAAAATTTCCTGAAGTGCCGGAAATCTTTAAGGCGGCCACAAATTGTTGTGAAACCTTGTGCAGTTACTGTTGTTGCATGTGCTGCATCCAGTGTTGTACCCGGATAAACAACCAATGTGCAACTGCATTGACACAACTCTGCATTGGTCTAGGATGCTTCGGCTGCATCACATGTTGTTCAGATATATGCTGTTCTGGAAACGAAGGCTGA

>Glyma17g05580.2   sequence type=CDS   gene model=Glyma17g05580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATGACAATGGGAACCAAAACGCCTCGCCACCTCAAAACGGAGGGTTTCTCATCCCGGATATATTTACTTTAACTATACCGCAGATTGATGGAGGTTCCAATTTGTCGATCAAAGTTCGGTGGTCTCAGAAAATAGTGTTCTCCAAAGGCCAGTTCTCTTTGAATGTGCCGTTTACCTTTCCTGATTTCGTTAACCCTGCGGGGAAGAAAATATCTAAAAGAGAAAAGATACAAATTAATGTGGATGCTGTTACTGGAGGTGAGCTTCTGTGCAAGACATTAAGCCACCCACTGAAGGAAGTGAGGCGTCATGTTGGGAGCATGGGCTTCTTATATGATTCCGATGTTCTTTCATGGTCTAAAGTTGATTTTAGCTTTTCATATGCTGTTTCTTCAAGTCATATAACTGGTGGTGTTCTTTTGGAATCTGCATCTGTGCATGATTTTGATCAAAGAGAGATGTTCTACATGTATCTTTCTACAGGAGATATTCAGAGTGACAAGGTATTCAAAAAGGACATAATATTCATTATTGACATCAGCGGTAGTATGCGGGGAAAGCTAATTGAAGACACAAAGAATGCACTATTGACTGCTCTCTCTAAGCTTAATCAGGCTGATTCATTTAATATTATAGCCTTTAATGGAGAGACTTATCTATTTTCCAAAACGATGGAATTGGCTTCCGGGGATGCTGTTGAAAGGGCCACTGAGTGGATTAACACGAACTTTGTTGCTGGGGGTGGTACAAATATTTCTCATCCATTAAACACGGCAATAGAGATGCTATCCAATATTCAAAGTTCAGTTCCAATAATTTTCCTAGTTACAGATGGAACTGTTGAAGATGAAAGACAAATTTGTGCTATGGTAAAGAATCGTATGATCAATGGAGAGTCAATATGCCCTCGAATTTACACTTTTGGCATTGGTTCGTTCTGCAATCATTATTTCTTGCGAATGCTCGCAATGATTGGTAGGGGCCAATATGATGCTGCGTTGGATGTAGATTTGATTGAACCTCGAATGCTGACATTGTTTGGCAAAGCTTCATCTCTCATTCTTGCAAATATCAAAATGGACACATTGGATGATCTTGATGACCTCGAGGTATACCCTCCTCATATTCCAGATCTTTCATCAGAGGGTCCATTGATTTTATCTGGGAGATACAGGGGAAATTTTCCCAAAACTCTTAAAATCGAAGGTATCTTGGCTGATTTCAGTAATTTTGTAGTAGATATGAAGATACAAAATGCTAAGGACATTCCTGTGCAAAAGATTTCTGCAAGAGATCAAATAGAGCATCTTACTGCCCAAGCATGGCTCATGGAAAATAAACAACTAGAACAGAAGGTTGCAAAATTGAGCTTGCAGACTGGCTTTATGTCTGAGTATACACGAATGATAATACTTGAGACTGATCATCTAAAGAAAGTCAAGGAATCAGCCGGAACGAAAGAAGCGTCAAAAAAGAGCCATCCTCAGTATGAGGCACCCGTCCAAGGCCAGAGAATGATTTTACTACCCCATTTGGGTATTGGCTTTGGCAACTTAACTGCAACTGCTGAAAATACTCCTCCAGGATTTGAATCAAAATTTCCTGAAGTGCCGGAAATCTTTAAGGCGGCCACAAATTGTTGTGAAACCTTGTGCAGTTACTGTTGTTGCATGTGCTGCATCCAGTGTTGTACCCGGATAAACAACCAATGTGCAACTGCATTGACACAACTCTGCATTGGTCTAGGATGCTTCGGCTGCATCACATGTTGTTCAGATATATGCTGTTCTGGAAACGAAGGCTGA

Predicted protein sequences of Glyma17g05580

Limit To All Plant Sequences

>Glyma17g05580.1   sequence type=predicted peptide   gene model=Glyma17g05580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQDFSKAVDDGLKLSKRIYFGKDRAVAPPKPPPPMTRSATAFLPSAPMVYAVISDPGIVDNPDIPSYQPHVYGRCDPPALIPLQMNAIQMEADCYHETAFITVSGTWRLHCVMGSRSCDCRIAVPVSHQGSILGVEVSVSRKSYSTQLVVMEDDNGNQNASPPQNGGFLIPDIFTLTIPQIDGGSNLSIKVRWSQKIVFSKGQFSLNVPFTFPDFVNPAGKKISKREKIQINVDAVTGGELLCKTLSHPLKEVRRHVGSMGFLYDSDVLSWSKVDFSFSYAVSSSHITGGVLLESASVHDFDQREMFYMYLSTGDIQSDKVFKKDIIFIIDISGSMRGKLIEDTKNALLTALSKLNQADSFNIIAFNGETYLFSKTMELASGDAVERATEWINTNFVAGGGTNISHPLNTAIEMLSNIQSSVPIIFLVTDGTVEDERQICAMVKNRMINGESICPRIYTFGIGSFCNHYFLRMLAMIGRGQYDAALDVDLIEPRMLTLFGKASSLILANIKMDTLDDLDDLEVYPPHIPDLSSEGPLILSGRYRGNFPKTLKIEGILADFSNFVVDMKIQNAKDIPVQKISARDQIEHLTAQAWLMENKQLEQKVAKLSLQTGFMSEYTRMIILETDHLKKVKESAGTKEASKKSHPQYEAPVQGQRMILLPHLGIGFGNLTATAENTPPGFESKFPEVPEIFKAATNCCETLCSYCCCMCCIQCCTRINNQCATALTQLCIGLGCFGCITCCSDICCSGNEG*

>Glyma17g05580.2   sequence type=predicted peptide   gene model=Glyma17g05580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDDNGNQNASPPQNGGFLIPDIFTLTIPQIDGGSNLSIKVRWSQKIVFSKGQFSLNVPFTFPDFVNPAGKKISKREKIQINVDAVTGGELLCKTLSHPLKEVRRHVGSMGFLYDSDVLSWSKVDFSFSYAVSSSHITGGVLLESASVHDFDQREMFYMYLSTGDIQSDKVFKKDIIFIIDISGSMRGKLIEDTKNALLTALSKLNQADSFNIIAFNGETYLFSKTMELASGDAVERATEWINTNFVAGGGTNISHPLNTAIEMLSNIQSSVPIIFLVTDGTVEDERQICAMVKNRMINGESICPRIYTFGIGSFCNHYFLRMLAMIGRGQYDAALDVDLIEPRMLTLFGKASSLILANIKMDTLDDLDDLEVYPPHIPDLSSEGPLILSGRYRGNFPKTLKIEGILADFSNFVVDMKIQNAKDIPVQKISARDQIEHLTAQAWLMENKQLEQKVAKLSLQTGFMSEYTRMIILETDHLKKVKESAGTKEASKKSHPQYEAPVQGQRMILLPHLGIGFGNLTATAENTPPGFESKFPEVPEIFKAATNCCETLCSYCCCMCCIQCCTRINNQCATALTQLCIGLGCFGCITCCSDICCSGNEG*

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