Glyma17g05570 - SoyBase

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Report for Sequence Feature Glyma17g05570

Feature Type:	gene_model
Chromosome:	Gm17
Start:	3907498
stop:	3910242
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g05570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19140	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762); Has 748 Blast hits to 748 proteins in 260 species: Archae - 0; Bacteria - 218; Metazoa - 126; Fungi - 101; Plants - 39; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink). \| chr1:6611026-6612414	SoyBase	E_val: 3.00E-121	ISS
GO:0006744	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2969	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR21427	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR21427:SF2	Panther	gb def: T29M8.1/T29M8.1	JGI		ISS
PF08511	PFAM	COQ9	JGI		ISS
UniRef100_B9RR78	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquinone biosynthesis protein COQ9, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9RR78_RICCO	SoyBase	E_val: 5.00E-122	ISS
UniRef100_C6TNR9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TNR9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g05570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g05570

Paralog	Evidence	Comments
Glyma13g17150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g05570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g048000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g05570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g05570

Limit To All Plant Sequences

>Glyma17g05570.1   sequence type=CDS   gene model=Glyma17g05570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATCGAACGGCGGCGAAGCGGTTGGTGAGCGGTGCAAGATACTACTATACTGGCAAGGTTGGGCTCAGATTCCGGCCTTCTCAGATATTGATACCCTCTTCTCGCTTTTCCACATCCGAGACTCAACCACTTCCCATTCCCGTCGCCACCGAAACCGAAACCCCTAACTCTTCAGATTCGTCCCCTTCTTCTTCATCTTCCTCAACAGCCACAAAACCCAGAGCCAAGTACGAGGACCAACAAACTCGCGTGCTTCAGGCCTCGCTCTCTTACGTCTTAAAGTTGGGGTGGACAGAAGCTGCTCTAGTTGCAGGAGCAAGGGATGTTGGTCTTTCACCATCTATCGTTGGATCTTTGCCCAGAAAGGAAGCAACACTGGTCGAGTATTTCATGGACGGCTGCTTACAAAGACTTGTTGATAAAATTGACTCAGATGAGAGTTTAAAAAATTTGACACCAAGTGACTGCATCTCTAAGCTTATCAGATTTCGTTTAGAAATGCAAGCTCCATATATATCAACATGGCCCCAAGCTCTTAGCATCCAGGCACAACCTGTTAATGTTCCTACAAGTTTTAAGCAGAGGGCAGTGCTTGTGGATGAGATCTGGCATGCTGCTGGTGATAATGCTTCCGACATTGATTGGTATGCCAAGCGCACTGTCCTTGGAGGAATATACTCAACAACTGAGATTTATATGCTGACAGATAGCTCTCCTGATTTCCGTGATACATGGGCTTTCCTGGATGCTCGAGTGAAAGATGCCTTTGATATAAAGAAAACCATTCAAGAGGCACAGTATTTGGCAGAAGCTGTCAGTACCGGGCTGGGGAACTCCTTTCAAGGGTTTGTCGGGAAAGTTTTCCAGAGATGA

Predicted protein sequences of Glyma17g05570

Limit To All Plant Sequences

>Glyma17g05570.1   sequence type=predicted peptide   gene model=Glyma17g05570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYRTAAKRLVSGARYYYTGKVGLRFRPSQILIPSSRFSTSETQPLPIPVATETETPNSSDSSPSSSSSSTATKPRAKYEDQQTRVLQASLSYVLKLGWTEAALVAGARDVGLSPSIVGSLPRKEATLVEYFMDGCLQRLVDKIDSDESLKNLTPSDCISKLIRFRLEMQAPYISTWPQALSIQAQPVNVPTSFKQRAVLVDEIWHAAGDNASDIDWYAKRTVLGGIYSTTEIYMLTDSSPDFRDTWAFLDARVKDAFDIKKTIQEAQYLAEAVSTGLGNSFQGFVGKVFQR*

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