SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G22830 | AT | Annotation by Michelle Graham. TAIR10: magnesium (Mg) transporter 10 | chr5:7627676-7630633 FORWARD LENGTH=459 | SoyBase | E_val: 0 | ISS |
| GO:0015693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: magnesium ion transport | SoyBase | N/A | ISS |
| GO:0030001 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metal ion transport | SoyBase | N/A | ISS |
| GO:0030003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0070838 | GO-bp | Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0015095 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0046873 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG2662 | KOG | Magnesium transporters: CorA family | JGI | ISS | |
| PTHR13890 | Panther | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | JGI | ISS | |
| PTHR13890:SF3 | Panther | JGI | ISS | ||
| PF01544 | PFAM | CorA-like Mg2+ transporter protein | JGI | ISS | |
| UniRef100_Q058N4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Magnesium transporter MRS2-11, chloroplastic n=1 Tax=Arabidopsis thaliana RepID=MRS2B_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E3E5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E3E5 related cluster n=1 Tax=unknown RepID=UPI000233E3E5 | SoyBase | E_val: 0 | ISS |
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Glyma17g05471 not represented in the dataset |
Glyma17g05471 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g30461 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g320800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g05471.1 sequence type=CDS gene model=Glyma17g05471 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTTATTTTGGCCGCACGTGCTGCAGTTCCGTTCTCAACCTTCGCTCGGACATGCTAACTGCGTGTTCTTCTCCGATCTCACTGAATCCCGCTCTGTAGAACTTTCATGCACTGATTCCTTCACTCTGGTTCGCCGGTGCAAGATCTCCGGTCCGGCTCCGGCGGCGCTGAAACCGGTGAAATGCCTCGGCAGATCTACGGGGGAGAAGCAATGGAGTGACGCCGAAACTGCCGTATCCGACACCGACGAAGTTGCTGATGAACCGAATGACCGGAACCAAACTTCTGTTCCGACAAATGGTCGCGTTGAGTCGCAGAGGATTGCCACCACGTCTTCCGGCGACTCTCTCTCTCTCGGAATTCGAGAACCGGTTTATGAAGTTGTTGAAGTGAGGTCCAATGGGAAAGTATCAACTAGAAAAATCAACAGGAGACAATTGTTGAAGTCAAGTGGTCTTCGTCCACGGGACATTCGAAGTGTGGATCCTTCATTGTTTATGACAAATTCAATGCCTGCTTTGCTGGTCCGGGAGTATGCTATACTTCTAAATCTGGGTTCACTACGAGCAATAGCAATGCAAGATTGTGTACTTATATTTGACAATAATCGTATAGGAGGGAAAGCTTTTCTGGAGACATTGCTACCTCGATTGAACCCCAAGAACAACAATGGAGGGCCATCAATGCCATTTGAACTTGAGGTTGTTGAAGCAGCATTGCTTTCAAGAATACAGCGATTGGAGCAGAGATTGATGGACTTAGAACCTCGTGTACAAGCTCTTCTTGAGGCATTGCCAAATCGGTTAACTGGTGACATATTGGAGCAGCTTCGTATTAGCAAACAAACTTTGGTTGAGTTAGGTTCTAAGGCAGGAGCTCTCAGACAGATGCTGCTTGACCTTCTGGAGGATCCCCATGAAATACGCCGTATATGTATCATGGGAAGAAACTGCACACTTAGTAAAGGAAACAATGATATGGAATGTTCAGTGCCTTTTGAAAAGCAGAATGCTGAGGAGGAGGAGGAGGAAATCGAAATGCTTCTGGAAAATTATCTTCAAAGATGTGAATCTTGTCATGGTCAAGCTGAAAGGCTTCTTGATTCTGCAAGGGAAATGGAAGATTCTATAGCTGTCAGTTTGAGTTCACGTAGGCTTGAGGTTAGCAGAGTAGAACTGCTTTTGCAGGTTGGAACATTCTGCGTGGCAATAGGCGCCCTTGTAGCAGGTATATTTGGCATGAACCTGAAGTCCTATCTTGAGGAACATGTGTTGGCATTTTGGCTGACAACAGCAGGGATAATTATTGGTGGCATTATTGCTTTCTTTCTAATGTATTCCTACCTCAGGGCTAGGAAAATATTTTAA
>Glyma17g05471.1 sequence type=predicted peptide gene model=Glyma17g05471 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALFWPHVLQFRSQPSLGHANCVFFSDLTESRSVELSCTDSFTLVRRCKISGPAPAALKPVKCLGRSTGEKQWSDAETAVSDTDEVADEPNDRNQTSVPTNGRVESQRIATTSSGDSLSLGIREPVYEVVEVRSNGKVSTRKINRRQLLKSSGLRPRDIRSVDPSLFMTNSMPALLVREYAILLNLGSLRAIAMQDCVLIFDNNRIGGKAFLETLLPRLNPKNNNGGPSMPFELEVVEAALLSRIQRLEQRLMDLEPRVQALLEALPNRLTGDILEQLRISKQTLVELGSKAGALRQMLLDLLEDPHEIRRICIMGRNCTLSKGNNDMECSVPFEKQNAEEEEEEIEMLLENYLQRCESCHGQAERLLDSAREMEDSIAVSLSSRRLEVSRVELLLQVGTFCVAIGALVAGIFGMNLKSYLEEHVLAFWLTTAGIIIGGIIAFFLMYSYLRARKIF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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