SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G22780 | AT | Annotation by Michelle Graham. TAIR10: Adaptor protein complex AP-2, alpha subunit | chr5:7590100-7597828 REVERSE LENGTH=1013 | SoyBase | E_val: 0 | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0030117 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane coat | SoyBase | N/A | ISS |
| GO:0030131 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: clathrin adaptor complex | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein transporter activity | SoyBase | N/A | ISS |
| KOG1077 | KOG | Vesicle coat complex AP-2, alpha subunit | JGI | ISS | |
| PTHR22780 | Panther | ADAPTIN, ALPHA/GAMMA/EPSILON | JGI | ISS | |
| PTHR22780:SF4 | Panther | ADAPTER-RELATED PROTEIN COMPLEX 2 ALPHA 1 SUBUNIT (ALPHA-ADAPTIN A) | JGI | ISS | |
| PF01602 | PFAM | Adaptin N terminal region | JGI | ISS | |
| PF02296 | PFAM | Alpha adaptin AP2, C-terminal domain | JGI | ISS | |
| PF02883 | PFAM | Adaptin C-terminal domain | JGI | ISS | |
| UniRef100_B9SN68 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AP-2 complex subunit alpha, putative n=1 Tax=Ricinus communis RepID=B9SN68_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E3DE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E3DE related cluster n=1 Tax=unknown RepID=UPI000233E3DE | SoyBase | E_val: 0 | ISS |
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Glyma17g05410 not represented in the dataset |
Glyma17g05410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g30520 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.13g320200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g05410.1 sequence type=CDS gene model=Glyma17g05410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGATGTCGGGGATGCGAGGACTCTCCGTGTTCATAAGCGATATTCGCAATTGCCAGAACAAGGAGCAGGAGAGGCTCCGCGTTGACAAGGAACTCGGCAACATTCGCACGCGCTTTAAAAACGAGAAGGCTTTGACTCCATATGAGAAAAAGAAATATGTTTGGAAAATGCTTTACATATATATGCTTGGATATGATGTGGATTTTGGTCACATGGAAGCTGTTTCTCTTATATCTGCCCCAAAGTATCCTGAAAAACAGGTTGGGTACATTGTAACATCAAGTTTGCTTAATGAAAATCATGACTTTCTCAGGTTGGCTATAAATACAGTGCGCAATGATATCATTGGTCGTAATGAAACCTTCCAGTGTCTAGCATTGACTATGGTTGGAAATATTGGTGGGAGAGAATTTGCTGAGTCCTTAGCACCTGATGTACAGAAGTTGTTGATATCGAGCAGCTGCAGACCACTTGTTAGAAAAAAAGCCGCATTGTGTTTGCTGCGACTGTACAGGAAAAATCCTGATGTTGTCAATGTAGATGGATGGGCGGATCGGATGGCACAACTTCTGGATGAACGAGACCTTGGTGTTTTGACATCTTCTATGAGTCTTCTTGTTGCATTAGTATCAAACAACCATGAGGCATATTGGAGTTGTCTTCCTAAGTGTATCAAAATTTTAGAACGGCTTGCTAGGAACCAGGATATCCCACAAGAATACACTTACTACGGTATCCCATCTCCCTGGCTTCAGGTCAAAACAATGAGGGCTCTTCAATATTTTCCTACCATTGAAGATCCTAATGCAAGAAGGTCATTGTTTGAGGTCTTACAAAGGATACTGATGGGGACTGATGTTGTAAAAAATGTGAACAAAAATAATGCATCCCATGCCGTTCTTTTTGAAGCTCTTGCTCTGGTGATGCATCTTGATGCTGAAAAAGAGATGATGTCTCAATGTGTGGCTCTTCTTGGAAAATTTATTGCTGTCCGTGAACCAAACATTCGATATCTTGGCTTGGAGAATATGACAAGAATGTTGATGGTTACTGATGTACAAGATATCATTAAAAGACATCAAGCTCAGATTATTACCTCATTGAAGGATCCTGACATCAGTATTCGGAGGCGTGCTCTAGATTTGCTTTATGGCATGTGTGATGTTTCAAATGCAAAGGATATAGTTGAAGAACTACTGCAGTATCTCAGCACAGCGGAGTTTGCAATGCGTGAGGAATTGTCACTTAAAGCAGCTATTCTTGCTGAGAAGTTTGCACCAGACCTTTCATGGTATGTTGACGTGATTCTTCAATTAATTGACAAGGCCGGAGATTTTGTTAGCGATGACATATGGTTTCGGGTGGTTCAGTTTGTTACAAACAATGAAGACTTACAGCCTTATGCTGCAGCAAAAGCTCGAGAATATCTTGACAAACCTGCTATACATGAGACAATGGTTAAGGTCAGTGCATATATACTTGGAGAGTTTGGACACCTTCTAGCAAGACGACCTGGATGCAGTCCGAAGGAACTATTTAGCATTATACATGAGAAGCTTCCTACTGTATCGACTTCTACTATTTCTATTCTTTTGTCAACATATGCTAAAATTCTGATGCACAGTCAACCACCAGACCCTGAATTACAGAATCAAATATGGACAATATTTAAGAAATATGAAAGCTCAATTGAAGTCGAAATACAGCAAAGATCTGTTGAATATTTTGCATTGAGTAGAAAAGGTGCAGCTCTAATGGATATATTGGCCGAAATGCCTAAATTCCCTGAACGACAGTCTGCATTGATCAAAAAGGCTGAAGACACTGAAGTCGATACAGCGGAACTAAGTGCTATAAAGTTACGAGCTCAGCAGCAATCCCAAACATCAAATGCTTTGGTTGTAACAGGCCAAAGTCATGCTAATGGAACTCCACCTGTTGGCCAACTTAGCCTTGTAAAGGTGCCCAGCATGAGTAGCAATGCGGATGAGGCAGATCAAAGATTATCCCAGGAAAATGGGACTTTGAGTAAAGTAGATTCTCAACCTCCCTCTGCAGATCTCCTTGGTGATCTCTTGGGTCCACTTGCTATTGAAGGCCCTCCCGGTATCAGTGTCCACCCTCAGCCAAGCTCCAATTCAGGATTGGAAGGAACTGTAGTTGAAGCCACGGCCATAGTACCTGCTGGAGAACAGGCCAATTCTGTGCAGCCAATTGGAAATATTGCTGAAAGATTTCATGCTTTGTGCATGAAGGATAGTGGTGTTCTATATGAGGATCCTTATATTCAGATTGGCATTAAAGCAGAATGGAGAGCTCATCAAGGGCATCTTGTTCTTTTCTTGGGAAACAAGAATACTTCTCCTCTTGTCTCTGTTCAAGCTTTAATATTGCATCCCACGCATTTGAAGATGGAGCTGTCTCTAGTACCAGAAACTATACCTCCCCGGGCACAAGTGCAATGCCCACTTGAGGTCATTAATCTCCACCCAAGCAGGGATGTTGCCGTTCTTGACTTCTCCTACAAGTTTGGTAACAATATGGTCAATGTCAAGCTTCGCCTACCTGCTGTCCTAAATAAATTTCTTCAGCCTATAACTATATCTGCTGAAGAGTTTTTCCCTCAATGGAGATCACTTCCTGGACCACCTTTGAAACTTCAAGAAGTGGTTAGAGGTGTTAGACCACTTCCACTGCTCGAAATGGCAAACTTATTCAACAGTTTCCATTTGACAGTTTGCCCAGGGCTTGATCCCAATCCAAACAATCTTGTTGCAAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAGCAAGAATTGAAACAGACCCAGCAGACCGAACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAACACTAACATTTGAGCTGAAGGAGTTCATCAAGGACCAATTAGTCAGCATTCCCACCGCAGCAACCCATGTACCAACACAACCAGCTCCAACATCTCCACCAGTGGCCCAACCAGGCAGTGCTCCCACAGCATTGACGGATCCTGGGGCAATGCTGGCTGCTCTTTTATGA
>Glyma17g05410.1 sequence type=predicted peptide gene model=Glyma17g05410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMSGMRGLSVFISDIRNCQNKEQERLRVDKELGNIRTRFKNEKALTPYEKKKYVWKMLYIYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSSLLNENHDFLRLAINTVRNDIIGRNETFQCLALTMVGNIGGREFAESLAPDVQKLLISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWADRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCIKILERLARNQDIPQEYTYYGIPSPWLQVKTMRALQYFPTIEDPNARRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEALALVMHLDAEKEMMSQCVALLGKFIAVREPNIRYLGLENMTRMLMVTDVQDIIKRHQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTAEFAMREELSLKAAILAEKFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDKPAIHETMVKVSAYILGEFGHLLARRPGCSPKELFSIIHEKLPTVSTSTISILLSTYAKILMHSQPPDPELQNQIWTIFKKYESSIEVEIQQRSVEYFALSRKGAALMDILAEMPKFPERQSALIKKAEDTEVDTAELSAIKLRAQQQSQTSNALVVTGQSHANGTPPVGQLSLVKVPSMSSNADEADQRLSQENGTLSKVDSQPPSADLLGDLLGPLAIEGPPGISVHPQPSSNSGLEGTVVEATAIVPAGEQANSVQPIGNIAERFHALCMKDSGVLYEDPYIQIGIKAEWRAHQGHLVLFLGNKNTSPLVSVQALILHPTHLKMELSLVPETIPPRAQVQCPLEVINLHPSRDVAVLDFSYKFGNNMVNVKLRLPAVLNKFLQPITISAEEFFPQWRSLPGPPLKLQEVVRGVRPLPLLEMANLFNSFHLTVCPGLDPNPNNLVASTTFYSESTRAMLCLARIETDPADRTQLRMTVASGDPTLTFELKEFIKDQLVSIPTAATHVPTQPAPTSPPVAQPGSAPTALTDPGAMLAALL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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