Glyma17g05350 - SoyBase

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Report for Sequence Feature Glyma17g05350

Feature Type:	gene_model
Chromosome:	Gm17
Start:	3695225
stop:	3701078
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g05350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22740	AT	Annotation by Michelle Graham. TAIR10: cellulose synthase-like A02 \| chr5:7555379-7559866 REVERSE LENGTH=534	SoyBase	E_val: 0	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0051753	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mannan synthase activity	SoyBase	N/A	ISS
PTHR10587	Panther	N-ACETYLGLUCOSAMINYLTRANSFERASE-RELATED	JGI		ISS
PTHR10587:SF34	Panther	MANNAN SYNTHASE	JGI		ISS
PF00535	PFAM	Glycosyl transferase family 2	JGI		ISS
UniRef100_G7JM38	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucomannan 4-beta-mannosyltransferase n=1 Tax=Medicago truncatula RepID=G7JM38_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MS67	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MS67_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g05350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g05350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g319600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g05350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g05350

Limit To All Plant Sequences

>Glyma17g05350.1   sequence type=CDS   gene model=Glyma17g05350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAGCGAGTCCTAAAATTTTCATTCCAAACACGATCCAGGGAGTGAGTGAGCACGTGACGGGGCAGATTGAACTGCTCTGGGAGTTAGTGAAAGTGCCATTGATAGTGCCTCTGCTGAAGCTTGGAGTGTACATTTGTTTAGCAATGTCACTTATGCTTTTCATGGAGAGGCTCTACATGGGCATCGTCATCATTCTAGTGAAACTCTTCTGGAAAAAACCCGAACAGCGTTACAACTACAAGCCCCTCCAAGACGACGTCGAATTGGGCTCCTTCATCTTCCCCACGGTCCTAATACAAATCCCAATGTTCAACGAAAAAGAGGTTTACAAGGTGTCCATCGGAGCAGCTTGTGGGCTTTCATGGCCCAGTGACCGTCTCGTTATCCAAGTCCTGGACGATTCAACTGACACTGTCATTAAGGAAATGGTGGAGCAAGAATGTTTGAGATGGGCAAGTAAAGGCATCAACATAACGTACCAAATAAGGGAGAACAGAACGGGTTACAAAGCTGGTGCGTTGAAAGAAGGCCTCAAGCGAAGCTATGTGGAGCATTGCGAGTACGTGGCAATATTCGACGCGGATTTCAGGCCAGAGCCAGACTTTCTCAGGCGAGCGATTCCATTCTTGGTGGGGAACCCTGAGATTGCCCTGGTTCAAGCTCGTTGGAGGTTTGTGAATGCGAATGAGTGCTTGTTGACAAGAATGCAAGAGATGTCACTGGATTATCATTTCACAGTAGAGCAAGAAGTTGGGTCAGCCACTCATGCTTTCTTTGGTTTCAATGGGACAGCGGGTATATGGAGAATTGCTGCTATCAATGAAGCTGGAGGGTGGAAAGACAGAACAACGGTGGAGGACATGGATCTTGCTGTTCGTGCCAGCCTTAGGGGCTGGAAGTTTTTGTACCTCGGAGACCTTCAGGCGAAAAGTGAGCTTCCAAGTACTCTTAGAGCCTTCCGCTTCCAGCAGCATCGATGGTCTTGTGGTCCTGCTAATCTATTCCGCAAAATGGTGATGGAGATAGTAAGGAACAAGAAAGTAAAATTCTGGAAGAAAGTGTACGTTATATACAGCTTCTTCTTTGTTCGTAAAATCATAGCTCACATGGTCACATTCTTCTTCTACTGTGTGGTGCTTCCCTTGACAATTTTGGTCCCTGAAGTTCGTGTTCCAATTTGGGGAGCTGTTTATATTCCTTCCATCATCACCACCCTCAACTCAGTAGGCACACCAAGGTCCATTCATCTGTTGTTCTACTGGATCCTTTTTGAGAATGCGATGTCATTGCACCGTACGAAGGCGACCTTCATAGGCCTGCTAGAGGCCGGGAGAGCCAATGAGTGGGTCGTTACTGAAAAACTTGGTGACTCTGTAAATAATAAGAACAAAAGCAATGTCACCAAAGCAATCAGAAAATCTCGATTCAAATTTGGTGAAAGACTTCATTTATTGGAGCTTGGATTCGCTGCCTTCCTCTTCCTTTGTGGATGCTATGACTATGTGCACGGCAAGAACAACTACTTTTTGTACCTCTTCCTTCAGACCATAACCTTCTCAATCGTAGGATTTGGCTATGTTGGCACCATTGTTTAG

Predicted protein sequences of Glyma17g05350

Limit To All Plant Sequences

>Glyma17g05350.1   sequence type=predicted peptide   gene model=Glyma17g05350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEASPKIFIPNTIQGVSEHVTGQIELLWELVKVPLIVPLLKLGVYICLAMSLMLFMERLYMGIVIILVKLFWKKPEQRYNYKPLQDDVELGSFIFPTVLIQIPMFNEKEVYKVSIGAACGLSWPSDRLVIQVLDDSTDTVIKEMVEQECLRWASKGINITYQIRENRTGYKAGALKEGLKRSYVEHCEYVAIFDADFRPEPDFLRRAIPFLVGNPEIALVQARWRFVNANECLLTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGIWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWKFLYLGDLQAKSELPSTLRAFRFQQHRWSCGPANLFRKMVMEIVRNKKVKFWKKVYVIYSFFFVRKIIAHMVTFFFYCVVLPLTILVPEVRVPIWGAVYIPSIITTLNSVGTPRSIHLLFYWILFENAMSLHRTKATFIGLLEAGRANEWVVTEKLGDSVNNKNKSNVTKAIRKSRFKFGERLHLLELGFAAFLFLCGCYDYVHGKNNYFLYLFLQTITFSIVGFGYVGTIV*

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