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Report for Sequence Feature Glyma17g05320

Feature Type:gene_model
Chromosome:Gm17
Start:3669885
stop:3676353
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g05320
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G22640AT Annotation by Michelle Graham. TAIR10: MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein | chr5:7529423-7533641 FORWARD LENGTH=871 SoyBaseE_val: 0ISS
GO:0008356GO-bp Annotation by Michelle Graham. GO Biological Process: asymmetric cell division SoyBaseN/AISS
GO:0009658GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast organization SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0016226GO-bp Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR23084Panther PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED JGI ISS
PTHR23084:SF32Panther SUBFAMILY NOT NAMED JGI ISS
PF02493PFAM MORN repeat JGI ISS
UniRef100_D7M1H5UniRef Annotation by Michelle Graham. Most informative UniRef hit: EMB1211 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M1H5_ARALL SoyBaseE_val: 0ISS
UniRef100_UPI000233DF62UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DF62 related cluster n=1 Tax=unknown RepID=UPI000233DF62 SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g05320
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g05320
ParalogEvidenceComments
Glyma12g30630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g05320 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g319300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g05320
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g05320
>Glyma17g05320.2   sequence type=CDS   gene model=Glyma17g05320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAACGACCAAGACCAGCAAGACTCTCCCCAACAAAATGCCCCTTATTCCGACTCCTCCTCCGACTCCGACTACGACTCCGACTACTCCTACGACGAGGCGGAGGACGAGGCCTTCCGCCGCGCCTTCGGCCAGCGCGAAGACGGTGACGAGTCGTCGCCGCCGGAGAACCTGAAGCGCGATGACCCGGAGGCGAACTTTCGCGCCTTCTCGGAGGCGTTGGAGAGCCCCGCGATGAAGGAGCTGCACGAGGAGCTGGACCCTTTAATCGCTGAGAAGAAAAACCCTTACGACTTCCCCAGAGACCATGAAGAATGGACCGAGCAGGACCTCAGGGAGCTTTGGGCCGATGGGCCTTACGAAATTGGCGGCACGGGCTGGGACCCTGTTTGGGCCACCGACGACGAGTGGCGCTATGTGAAGGAACAGATTGCGGATGGTGAAGAGCCTCCCATTGCGCCGTTTTATCTTCCTTACCGGAAGCATTACCCTCCCATTCCGGATAACCATTACGATATTGCCACCCCCAAGGATGCTATTGAAGAGTTGGATAGGATTGAGGAGTTTCTCAAATGGGTTAGCTACATTTTCGAAGATGGCAGCACGTATGAAGGGACTGTTTGGGATGACTATGCTCATGGGAAAGGAGTTTATGTTTCTGATGATGCATTGGTCAGGTATGAAGGTGAATGGTTTCAAAACGATGTGGAGGGTCATGGTGTAGTTGAAGTCGATATACCTGTTATAGAACCTGCTCCTGGGTCCAAGCTTGAAGCAAAGATGCGATCTCAAGGAAAGATAATAGCAAGGGATTTTTTGTCCCCGGAAGACAGAGAATGGCTTGAGAAGGATATTGAAGATATGTATTATCTTGCAGATGGGAACTATGAAATCCCCTTTTATGAGAATGAGGAATGGGTTAGGCAATTTGGAAGAAAGCCGGAGAAAGGTCGCTACCGTTATGCTGGTCAGTGGAAGCATGGGAGGATGCATGGATGTGGTGTATATGAAGTTAATGAGCGTATCTTATATGGTAGATTTTATTTTGGAGAATATGTGGATGAGGTTTCAGGATGTGATGAAGACATTTCAGCGATGCATGCTGGTATAGCAGAAGTTGCTGCTGCCAAGGCTCGCATGTTTGTTAACAAGCCAGATGGAATGGTTAGAGAAAAGAGAGGCCCATATAGTGATCCACAGCATCCTTACTTTTATGAAGAAGAGGATGTGTGGATGGCACCTGGCTTCATTAACCAGTTTTATGAAGTCCCTGATTACTGGAAAGTATATGTGCATGAAGTTGATCAAGAAAGAGAAATGTGGTTAAACTCTTTTTATAAAGCTCCTCTTAGGTTACCCATGCCAGCTGAGCTAGAGCACTGGTGGTCAAAAGAGGAGAATCATAAGATTCCTGAATTTGTCCTTATTAACAAGGAACCGGAGCCTGATCCTGAAGATCCTTCAAAGCTTATATATACTGAGGATCCTCTCATCCTCCATACACCAACTGGAAATATTATCAATTATGTCGAGGATGAGAAATATGGAATACGTTTATTCTGGCAGCCACCTTTGGGAAAGGATGAGGACGTGGATCCTGAAAAGGCTGTATTCCTGCCCCTTGGTTATGATGATTTTTATGGAATAGAGAAGGAGGAAAAAAAGGAGAGCATATGGATGCGTACTATACTTGCAATTGAAAATGCATGCAAGCCGTGGTTTGATAAGCTAGATAAATGGACTGAAGAGCAGAAAAAAATTAATGAAGAGGAAAAAAAAGCAATTGAGGAAGATCTTGAACTGATAGAAGCTGAAATTGGTCTAGAAGAGGCCATTGAGGATATGGAGGAGTTATTGCGCATAAGAGAGAAAGAAGAGGAAAAGAAGGCAAAGATGGGTTTGCTGGATGAAGAAGATGATGACAATGAAGGTGATGGTGATGATATGACTTCTGTAACCAAACAAGATGAAAAAGCTCCTGCAAAGGTTGTAGAAGTTCCCGCAGAGGTGGAAGAGGAAGATGATGACGATTGGGATGATGAAGAGGATGATAATAGTGCACAATCAAGTTTTGGGTCCGTTGAGCAGGGACAGACAACAGATCAGCTGAAGGGAAAACCTGGGAAATCTCCATTTTCTGCATCTTCACTTGCATTTGCTTCTAGCAGCCTTATCTCTGCTATTCCATCCAAGCTGCAACTATCATTTTCATTCTGGAACAAGGGGAGATCAAAACCGAAGCCAGTTCCTCCCCCATGCATTGATAGCTTGAGTAATATGAAAACTGTTGATTCAGTCAATTTCCGTCCTGTGACCAGCCAGAATGGTAGCTTGAAAGCGGTGGGCAAAACACATGGGAAAGTCAAGACAAGAAGCTCTTTTGGTGGGAAATTTCTTGGGGTGCACTCTCAGACTCGATCACATTTATTGGCTTCTGCAAATTCCAGTAGCAACTTGAAGGAGCCAAGAGTGAGTAGTGACATGTGGTTGCATGCAGCACCAGAGAGGGATTTAGACAGCATACTGTCTTTGCATTCATCATTGTATTATTTTGAACAGCATAGAGAGATTATTTGGTGA
Predicted protein sequences of Glyma17g05320
>Glyma17g05320.2   sequence type=predicted peptide   gene model=Glyma17g05320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANDQDQQDSPQQNAPYSDSSSDSDYDSDYSYDEAEDEAFRRAFGQREDGDESSPPENLKRDDPEANFRAFSEALESPAMKELHEELDPLIAEKKNPYDFPRDHEEWTEQDLRELWADGPYEIGGTGWDPVWATDDEWRYVKEQIADGEEPPIAPFYLPYRKHYPPIPDNHYDIATPKDAIEELDRIEEFLKWVSYIFEDGSTYEGTVWDDYAHGKGVYVSDDALVRYEGEWFQNDVEGHGVVEVDIPVIEPAPGSKLEAKMRSQGKIIARDFLSPEDREWLEKDIEDMYYLADGNYEIPFYENEEWVRQFGRKPEKGRYRYAGQWKHGRMHGCGVYEVNERILYGRFYFGEYVDEVSGCDEDISAMHAGIAEVAAAKARMFVNKPDGMVREKRGPYSDPQHPYFYEEEDVWMAPGFINQFYEVPDYWKVYVHEVDQEREMWLNSFYKAPLRLPMPAELEHWWSKEENHKIPEFVLINKEPEPDPEDPSKLIYTEDPLILHTPTGNIINYVEDEKYGIRLFWQPPLGKDEDVDPEKAVFLPLGYDDFYGIEKEEKKESIWMRTILAIENACKPWFDKLDKWTEEQKKINEEEKKAIEEDLELIEAEIGLEEAIEDMEELLRIREKEEEKKAKMGLLDEEDDDNEGDGDDMTSVTKQDEKAPAKVVEVPAEVEEEDDDDWDDEEDDNSAQSSFGSVEQGQTTDQLKGKPGKSPFSASSLAFASSSLISAIPSKLQLSFSFWNKGRSKPKPVPPPCIDSLSNMKTVDSVNFRPVTSQNGSLKAVGKTHGKVKTRSSFGGKFLGVHSQTRSHLLASANSSSNLKEPRVSSDMWLHAAPERDLDSILSLHSSLYYFEQHREIIW*






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