Report for Sequence Feature Glyma17g05280
Feature Type: gene_model
Chromosome: Gm17
Start: 3635118
stop: 3641698
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g05280
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G27810 AT
Annotation by Michelle Graham. TAIR10: nucleobase-ascorbate transporter 12 | chr2:11852338-11855988 FORWARD LENGTH=709
SoyBase E_val: 0 ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
GO:0022857 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity
SoyBase N/A ISS
KOG1292
KOG
Xanthine/uracil transporters
JGI ISS
PTHR11119 Panther
PURINE PERMEASE
JGI ISS
PTHR11119:SF8 Panther
SODIUM-DEPENDENT VITAMIN C TRANSPORTER
JGI ISS
PF00860 PFAM
Permease family
JGI ISS
UniRef100_B9HQT7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Nucleobase ascorbate transporter n=1 Tax=Populus trichocarpa RepID=B9HQT7_POPTR
SoyBase E_val: 0 ISS
UniRef100_I1MS61 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MS61_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g05280
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma17g05280
Paralog Evidence Comments
Glyma12g30670 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g05280 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.13g318900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g05280
Coding sequences of Glyma17g05280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g05280.1 sequence type=CDS gene model=Glyma17g05280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCAATTCCGATCCCAAAACGAGACCCCGTCCGGGACCGTGGCCGCCGGCGCCGGCGCCGGTCGTCAAGGCAATGCCGCCTGCTTCATGGGCCAAGAAAACGGGCTTCAAGCCCAAGTTCTCCGGCGAGGCCAATGCCAGCGACTCGGGCCAGATAAGCCTGCAGCCCAAGCCCAGGGAGCCCGACACAAACGTGGATCTCGAAGCGGGTCGGGCCAGGGATCCGGCGAATGGTGTGGCCCACCAGAACAAGGTTCCGCCGCTTCCACCTTCCAAGGATCAGCTCGTGAAGAAGCGAAGGGACCCCGACGGACTCCCCAAGAGCTCCGTTCCTAGTACCAATGGCCAAGCCACTGCGGAGCCTCCACCGCCGCCGCCTCCGCGGAGGACGGCGAGGCACGAGGAAGTTGTGGACGCGCCGCCGCAGGACGACGACGATTTCGTGTCGAGGCATTCGCATATGAAGTATGAGCTCAGAGATTCACCTGGTTTAGTTCCCATTGGTGTGTACGGTATTCAACATTACTTATCGATATTGGGTTCGTTGATTCTCATTCCGCTCGTTATAGTTCCGGCAATGGGAGGCTCTCATGAGGATACTTGTTCGGTGATTTCGACTGTGCTCTTTGTATCTGGAGTGACTACACTGTTGCATACAAGTTTTGGGTCGAGGTTGCCCTTGATACAAGGGCCTTCTTTTGTTTATCTGGCTCCGGTGTTGGCCATCATCAACTCCCCCGAATTTCAAGGATTAAATGGAAATAAATTCAAACATATAATGAAGGAGCTGCAAGGGGCTATAATTATTGGATCGGCTTTTCAAACTTTTCTTGGATATTCTGGACTTATGTCACTGTTAGTAAGGTTGATCAATCCTGTGGTTGTATCCCCAACTATTGCTGCAGTAGGACTTTCATTTTACAGTTATGGTTTTCCGCTAGTTGGTACATGTCTGGAGATTGGTGCAGTGCAGATCTTAGTGGTTATTGTTTTTTCTCTTTATCTTCGTAAAATATCTGTTCTTGGACACCGCATATTTCTAATATATGCAGTTCCTTTGGGTCTGGCAATTACATGGGCAGTTGCTTTCTTGCTGACTGAAGCTGGAGCCTACAACTACAAAGGGTGTGACATAAATATACCTGCCTCAAATATGGTTTCTGAGCACTGCAGAAAGCATGTCTCAAGGATGAAGTATTGTCGAGTTGATACTTCTAATGCATTGAAATCATCCCCGTGGTTTAGATTTCCTTATCCATTACAATGGGGTACTCCTGTCTTTCACTGGAAAATGGCTCTTGTGATGTGCGTGGTTTCCTTGATCTCATCTGTGGATTCGGTTGGTTCGTATCATGCATCTTCATTATTGGTAGCATCCAGACCTCCAACTCCCGGAGTTCTTAGTCGAGGAATTGGTTTGGAAGGTCTTTCTAGTGTCTTGGCTGGTCTCTGGGGAACTGGAACAGGTTCTACTACCTTAACCGAAAATGTTCATACAATTGCTGTCACTAAAATGGGAAGCCGCAGAGCAATTCAATTGGGTGCATGCTTTCTGATTGTGTTGTCTCTCGTGGGTAAGGTTGGAGGGTTCATTGCTTCAATTCCCGAAGTAATGGTTGCTGGTCTCCTATGCTTTATGTGGGCAATGCTTGCAGCATTGGGCTTGTCTAATCTACGTTATAGTGAGGCCGGAAGCTCTCGCAACATCATCATAATTGGGTTATCATTGTTTTTCTCTCTTTCCATACCTGCCTACTTTCAACAATATGGCATCTCTCCAAATTCCAACTTGTCGGTTCCAAGTTATTTCCAACCCTACATTGTAGCTTCTCATGGGCCTTTCCGCAGCAAATATGGAGGGTTAAACTATTTCCTGAACACAATCTTTTCACTACACATGGTGGTAGCTTTTCTTGTTGCTGTTATCTTGGATAATACTGTGCCTGGCAGCAAGCAGGAACGTGGGGTTTACGTTTGGTCGGAACCTGAGGTTGCTAGAAGGGAGCCTGCTGTTGCTAATGACTATGAGTTGCCCTTGAGAGTTGGTAAGATTTTCAGATGGGTGAAGTGGGTTGGTCTGTGA
Predicted protein sequences of Glyma17g05280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g05280.1 sequence type=predicted peptide gene model=Glyma17g05280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSNSDPKTRPRPGPWPPAPAPVVKAMPPASWAKKTGFKPKFSGEANASDSGQISLQPKPREPDTNVDLEAGRARDPANGVAHQNKVPPLPPSKDQLVKKRRDPDGLPKSSVPSTNGQATAEPPPPPPPRRTARHEEVVDAPPQDDDDFVSRHSHMKYELRDSPGLVPIGVYGIQHYLSILGSLILIPLVIVPAMGGSHEDTCSVISTVLFVSGVTTLLHTSFGSRLPLIQGPSFVYLAPVLAIINSPEFQGLNGNKFKHIMKELQGAIIIGSAFQTFLGYSGLMSLLVRLINPVVVSPTIAAVGLSFYSYGFPLVGTCLEIGAVQILVVIVFSLYLRKISVLGHRIFLIYAVPLGLAITWAVAFLLTEAGAYNYKGCDINIPASNMVSEHCRKHVSRMKYCRVDTSNALKSSPWFRFPYPLQWGTPVFHWKMALVMCVVSLISSVDSVGSYHASSLLVASRPPTPGVLSRGIGLEGLSSVLAGLWGTGTGSTTLTENVHTIAVTKMGSRRAIQLGACFLIVLSLVGKVGGFIASIPEVMVAGLLCFMWAMLAALGLSNLRYSEAGSSRNIIIIGLSLFFSLSIPAYFQQYGISPNSNLSVPSYFQPYIVASHGPFRSKYGGLNYFLNTIFSLHMVVAFLVAVILDNTVPGSKQERGVYVWSEPEVARREPAVANDYELPLRVGKIFRWVKWVGL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
