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Report for Sequence Feature Glyma17g05260

Feature Type:gene_model
Chromosome:Gm17
Start:3609110
stop:3612292
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g05260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G27770AT Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF868) | chr2:11833089-11834051 REVERSE LENGTH=320 SoyBaseE_val: 4.00E-118ISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
PF05910PFAM Plant protein of unknown function (DUF868) JGI ISS
UniRef100_I1MS59UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MS59_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q84M57UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q84M57_ORYSJ SoyBaseE_val: 6.00E-67ISS

Expression Patterns of Glyma17g05260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g05260
ParalogEvidenceComments
Glyma12g30690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g05260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.13g318700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g05260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g05260
>Glyma17g05260.1   sequence type=CDS   gene model=Glyma17g05260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATGTCAGATATAATATCTTGTTTCAACGAGAACGCAGTGAATGTGTCACACTCTTCATGTTCTAGCTACTCAAACAACGCTTGCATATCTCCAACTAGTGTCACACCTTCATCTCAAAATTCAGTGTCTTCTGTCTACAAAACCACCCTCTCAAACCAAAAGCAGCTTCTGATCACAGTCACGTGGTGCAAGAGCCACTCCAACCAAGGACTCACCATAACCTTCGGCGAAGAGAACAACAACCCTTTGGCACCATCTTTCAGACTCAACACCAATTCACGCTTTTTCAGGAAAAAGAAAGGAAGCAAAGTGTTGGAATCCGAAGACTCAAAAGTTGAAGTCTTCTGGGATCTTTCAAAGGCCAAGTATGGCACTGGCCCTGAACCTGTTGAAGGGTTTTACGTGGCGATTCTCGTTGATGCAGAAATAGGCCTTGCTCTTGGTGAAGATGTGACCAAGAAGTTCAAAACAAAGACCCTTTTGGGAAATGTTTCGCTGTTATCACGGCGTGAGCATTGCTCCGGTAACGCGGTCTACGCCACCAAGGCTCAGTTTTGTGACACTGGAACTCGGCATGACATTTTGATCAGATGCAGTGGCGAGAATGAAGGACTCAAGGCTCCTGCTTTGTCTGTTTGCATCGATAAGAAGACGGTGATTCGTGTGAAGAGGCTGCAGTGGAATTTCAGGGGAAACCACACGATTTTCGTCGATGGGTTGCTTGTGGATTTGCTTTGGGATGTTCATAACTGGTTTTTCAATCCTGCTTCTGGGTATGCTGTGTTCATGTTCAGGACCAGGAGTGGCTTGGATAGCAGATTGTGGTTAGAGGAGAAGATTGCACAGAAAGATAAAGATAGAGTTGAATTCTCCTTGTTGATCTATGCCTGTAAGAACACATGA
Predicted protein sequences of Glyma17g05260
>Glyma17g05260.1   sequence type=predicted peptide   gene model=Glyma17g05260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMSDIISCFNENAVNVSHSSCSSYSNNACISPTSVTPSSQNSVSSVYKTTLSNQKQLLITVTWCKSHSNQGLTITFGEENNNPLAPSFRLNTNSRFFRKKKGSKVLESEDSKVEVFWDLSKAKYGTGPEPVEGFYVAILVDAEIGLALGEDVTKKFKTKTLLGNVSLLSRREHCSGNAVYATKAQFCDTGTRHDILIRCSGENEGLKAPALSVCIDKKTVIRVKRLQWNFRGNHTIFVDGLLVDLLWDVHNWFFNPASGYAVFMFRTRSGLDSRLWLEEKIAQKDKDRVEFSLLIYACKNT*






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