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Report for Sequence Feature Glyma17g05220
Feature Type: gene_model
Chromosome: Gm17
Start: 3568340
stop: 3576444
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g05220
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G20730 AT
Annotation by Michelle Graham. TAIR10: Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related | chr5:7016704-7021504 REVERSE LENGTH=1164
SoyBase E_val: 0 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009630 GO-bp
Annotation by Michelle Graham. GO Biological Process: gravitropism
SoyBase N/A ISS
GO:0009638 GO-bp
Annotation by Michelle Graham. GO Biological Process: phototropism
SoyBase N/A ISS
GO:0009723 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus
SoyBase N/A ISS
GO:0009725 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to hormone stimulus
SoyBase N/A ISS
GO:0009733 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus
SoyBase N/A ISS
GO:0009741 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus
SoyBase N/A ISS
GO:0009785 GO-bp
Annotation by Michelle Graham. GO Biological Process: blue light signaling pathway
SoyBase N/A ISS
GO:0010311 GO-bp
Annotation by Michelle Graham. GO Biological Process: lateral root formation
SoyBase N/A ISS
GO:0040008 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of growth
SoyBase N/A ISS
GO:0045893 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0048366 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf development
SoyBase N/A ISS
GO:0048527 GO-bp
Annotation by Michelle Graham. GO Biological Process: lateral root development
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0046983 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity
SoyBase N/A ISS
PF02309 PFAM
AUX/IAA family
JGI ISS
PF02362 PFAM
B3 DNA binding domain
JGI ISS
PF06507 PFAM
Auxin response factor
JGI ISS
UniRef100_G7JS69 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Auxin response factor n=1 Tax=Medicago truncatula RepID=G7JS69_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233E26D UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E26D related cluster n=1 Tax=unknown RepID=UPI000233E26D
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g05220
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g05220
Paralog Evidence Comments
Glyma13g17270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g05220 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g047100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g05220
Coding sequences of Glyma17g05220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g05220.1 sequence type=CDS gene model=Glyma17g05220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGGCTCCATCCAACGGTTACTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACTATGAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTTTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCCCAAGGACACAGTGAACAAGTTGCAGCTTCCATGCAAAAGGAGGCTGACTTCATACCAAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCGTTGCATGCTGATCCTGAGACTGACGAGGTGTATGCACAGATGACCCTTCAACCTGTAAACAAATATGAGAAAGAAGCAATACTGGCATCAGACATCGGTCTCAAACAAAACCGTCAACCCACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACTAGCACTCATGGTGGATTTTCTGTGCCGCGTAGAGCAGCTGAGAAAATATTACCACCTTTGGATTATTCAATGCAACCTCCAGCTCAGGAGCTTGTAGCCAAGGATTTGCACGACAATACATGGGCATTTAGACATATTTATCGGGGACAACCAAAGAGGCATCTATTGACTACTGGATGGAGTGTATTTGTCAGCACTAAAAGACTGTTTGCCGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCATCTTCTTTTAGGTATAAGACGTGCTAATAGACAGCAACCAGCACTCTCTTCGTCGGTGATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCTGCTCATGCTGCTGCAAATAATAGCCCATTCACTATATTTTACAATCCAAGGGCTAGCCCCTCTGAATTTGTTGTTCCGTTAGCCAAGTATAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACTGAGGAGTCTGGAGTGCGTGGGTATATGGGGACAATCACTGGTATCAGTGACTTGGATCCTGTCCGTTGGAAAAGCTCACAGTGGCGCAATATTCAGGTTGGATGGGATGAATCAACAGCTGGTGAACGCCCCAGAAGAGTTTCAATCTGGGAAATTGAACCAGTGGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTCAGGCCAAAGTTCCCCCGGCAACCAGGAATGCCAGATGATGAGTCAGATATGGAAAATGCTTTCAAGAGAGCTGTGCCTTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCAATCTTTCCTGGTTTCAGTTTAATGCAGTGGATGAGCATGCAGCAGAATAACCAGCTCTCTGCTGCTCAATCAGGATGTTTCCCATCCATGCTTTCATCTAATACCCTTCAGGGTAACCTTAGCACTGATGACCCTTCCAAGTTATTGAGCTTTCAAGCTCCTGTCCTCTCTACCCCAAGTCTTCAATTAAACAAACCTAATCTACCAAATCAAATCAACCAGTTGCAACAGTCCCCAGTGTCATGGCCTCAGCAGCAACAGTTGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAACAACAGCAGCAACAACAACAACAGCAACAACAGCAGCAGCTGCAGTCATTGTTGCAAATACCAATGAACCAGCTCCAGCAGCAGAGGCAACAGCAGCTGCCTGAACCACAAAATCTGCCATTGTTGCAGCAACTGCCTCAGCATCTAGGACAGCAACCTCAGAAACAACAACAGTCAAGTCAACATGCTACTATTATGAATAATGGGGTAGTTGCCTCTAACCAAATTACAAATCAGTTTGCACAACAACCAATGGCATATGGTCAGCTTCAGCAACAACAGTTACTTTCAGGAGGTATCCAACCCCAGCAAGGTATCCAGTCAGCCACTAAGAATACATTCCCATTGACATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGACCAGCAAGCTAGCCTCTTACAGAGACAGCAGCAGCAACAACAGACACAATTGCAACAATCTCCACTGCAGTTGTTGCAGCAAAACCTGCCACAGAGAGCACTACAACAACCGCCAGCCACTCAAATGTTACAGCAAAATCCCTCAGAGCAACAACTCCACCTACAATTGCTACAGAAATTGCAGCAGCAGCAGCAACAACAACTTCTTTCCACGTCCACCCCACTTTTGCAGTCTCAGCTTCTACAACAACAAAATACTCACCAACAAAACCAGCAATCACTGCAGCCCCTGCTGCCTATATCTCAGCATCAGCCTCAACAACTTGGCAATAATGCATTCTCAACAGAGAAGCTTCTCAACAGCAACAACTTCTCTTCATCTCTTACGCAATCGCAACAGCTTTCAATGAACCAGCCCCAGAATACACAGAAATCACATACCATCACTAGAGCCCCCTCTACACTAACTGATGGAGATGCCCCATCATGCTCAACCTCTCCATCTACTAACAACTGCCAGGTGTCTCCTCCGAACCTCCTGAAAAGAAATCAGCAAATACCAGCCACATTAGGGGGGGGTTTGATAGTTGAGCCCACTAGTAATCTGATACAGGAGCTTCACAGTAAGCCTGACACACAGATCAAACAGGAGTTGCTCAATGTAAAAGGACCTGACCAGTTGAAGTATAAAGGGACAATTACTGATCCGCTGGAAGCTTCTTCTTCCGGAACATCTTACTGTCTTGATCCTGGTAATGTCCAGCAGAACTTGCCACTTTCCAACTTCTGCATGGAAAGGGATGTCCAATCACACCCAAGAAACAGTTTGCCATTTGACTCTAATCTGGATGGTCTAACCCCTGATACTATGCTTCTAAGGGGGTATGACTCCCAAAAAGATCTTCAAAATTTGTTGTCTAACTATGCTAGTGCTCCAAGGGACATTGAAACTGAGCTGTCAACCGCTGATATCAGCTCACAGTCGTTTGGAGTGCCAAACATGCCTTTCAAGCCAGGTTGCTCAAGTGATGTTGGCATCAATGATACTGGGGTTTTAAATAATAATAATGGTTTGCGGACCAACCAAACTCCACGAATGCGAACATATACCAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTTACCCGTTACAAGGGATATGACGAACTCCGGCATGATTTGGCTAGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCTAAGGACTGATTGGAAATTAGTATACGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGATGAATTTGTCAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCAGAAGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTGGTAATGTTCCAATCCCCAATCAAGCTTGCAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAGTATGAAGATAACTCAGCTGCCTCCTTTAATAGGTAA
Predicted protein sequences of Glyma17g05220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g05220.1 sequence type=predicted peptide gene model=Glyma17g05220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKAPSNGYLPNSGEGERKTMNSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDIGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKILPPLDYSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQHLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRGYMGTITGISDLDPVRWKSSQWRNIQVGWDESTAGERPRRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDMENAFKRAVPWLGDDFGMKDASSSIFPGFSLMQWMSMQQNNQLSAAQSGCFPSMLSSNTLQGNLSTDDPSKLLSFQAPVLSTPSLQLNKPNLPNQINQLQQSPVSWPQQQQLQQQQQQQQQQQQQQQQQQQQQQQQQQQLQSLLQIPMNQLQQQRQQQLPEPQNLPLLQQLPQHLGQQPQKQQQSSQHATIMNNGVVASNQITNQFAQQPMAYGQLQQQQLLSGGIQPQQGIQSATKNTFPLTSLPQDSQFQQQIDQQASLLQRQQQQQQTQLQQSPLQLLQQNLPQRALQQPPATQMLQQNPSEQQLHLQLLQKLQQQQQQQLLSTSTPLLQSQLLQQQNTHQQNQQSLQPLLPISQHQPQQLGNNAFSTEKLLNSNNFSSSLTQSQQLSMNQPQNTQKSHTITRAPSTLTDGDAPSCSTSPSTNNCQVSPPNLLKRNQQIPATLGGGLIVEPTSNLIQELHSKPDTQIKQELLNVKGPDQLKYKGTITDPLEASSSGTSYCLDPGNVQQNLPLSNFCMERDVQSHPRNSLPFDSNLDGLTPDTMLLRGYDSQKDLQNLLSNYASAPRDIETELSTADISSQSFGVPNMPFKPGCSSDVGINDTGVLNNNNGLRTNQTPRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGDLGGNVPIPNQACSGTDSGNAWRGQYEDNSAASFNR*