Glyma17g05180 - SoyBase

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Report for Sequence Feature Glyma17g05180

Feature Type:	gene_model
Chromosome:	Gm17
Start:	3514942
stop:	3516041
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g05180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20740	AT	Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily protein \| chr5:7025867-7026484 REVERSE LENGTH=205	SoyBase	E_val: 1.00E-44	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity	SoyBase	N/A	ISS
GO:0030599	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity	SoyBase	N/A	ISS
GO:0046910	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectinesterase inhibitor activity	SoyBase	N/A	ISS
PF04043	PFAM	Plant invertase/pectin methylesterase inhibitor	JGI		ISS
UniRef100_B9RR57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 21 kDa protein, putative n=1 Tax=Ricinus communis RepID=B9RR57_RICCO	SoyBase	E_val: 3.00E-55	ISS
UniRef100_I1MS50	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MS50_SOYBN	SoyBase	E_val: 5.00E-147	ISS

Expression Patterns of Glyma17g05180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g05180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g046800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g05180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g05180

Limit To All Plant Sequences

>Glyma17g05180.1   sequence type=CDS   gene model=Glyma17g05180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAACACAACGAGTTAACACTCTCGCACTTTTCCTCTTGTTGTTGCTCTCTCCGCCACGCCCCGCCGCATCAATGCCACCACGAGATCCGCTCCGGTCATCGTGCGCAAAGGCCAGGTACCCAACTCTCTGCTTCCAAACCCTCTCCAACTTCTCAAACCTCGCCACGAAGCCCTTGGACCTAGCCCAAGCCGCGATCAAGGTTAGCCTGGCTCGCACGCGCACCCTCTCCGTTTACTTCAAGACGCTGAATGCCACGTCGTCGCGTTTCGGGAAGAGGCAGCGAGTTGCGGTGAGTGACTGCGTGGAGCAGATATCCGACTCGGTGACTCAGTTGATCAACACGCTCAACGAGTTGCAGCACCTCCGCGCCGGAACCTTCCAGTGGCAGATGAGCAACGCTCAGACGTGGACCAGCGCCGCCCTCACCAACGGTGACACTTGCCTCAGCGGCTTCAACGACGGCGGCGCCACCGCGGACGGTGCTAAAATCAAGTTGGAGGTGAAGCGAAGGATCACCGACGTTGCCATGCTCACCAGTAACGCGTTGTATCTCATCAATCGCCTCGGTGATGATAGCGTGAGTGGGAAGCCTCGCACTGATTTCGGAAACTGA

Predicted protein sequences of Glyma17g05180

Limit To All Plant Sequences

>Glyma17g05180.1   sequence type=predicted peptide   gene model=Glyma17g05180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQTQRVNTLALFLLLLLSPPRPAASMPPRDPLRSSCAKARYPTLCFQTLSNFSNLATKPLDLAQAAIKVSLARTRTLSVYFKTLNATSSRFGKRQRVAVSDCVEQISDSVTQLINTLNELQHLRAGTFQWQMSNAQTWTSAALTNGDTCLSGFNDGGATADGAKIKLEVKRRITDVAMLTSNALYLINRLGDDSVSGKPRTDFGN*

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