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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma17g05170

Feature Type:gene_model
Chromosome:Gm17
Start:3502178
stop:3503053
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G43110AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20790.1); Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15091710-15 SoyBaseE_val: 1.00E-19ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009813GO-bp Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0019375GO-bp Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1MS49UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MS49_SOYBN SoyBaseE_val: 1.00E-113ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g05170 not represented in the dataset

Glyma17g05170 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g17330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g046700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma17g05170.1   sequence type=CDS   gene model=Glyma17g05170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGCTGTTTCTCCTCTAGAGGCCCAAGCCTTCAACTACTTGAGCTTCGGCTTCCTCAGCAATTTCTGGACCTGGCTCGCCCTCACTTTCTGGAGGACCCGAACTCCCACCTCCGAGTTGCTCCCACCACCCGACGACCCGATTCACGACGAGTCGGAGTCGGACCCTGTTGCCGTACCGGCGCGTGTTCCAATTCCATTTGCCGTTGACGTTGACGGAGCCAGGAAGGGGAAGTTTACCTTGTGTTACGAGGATGAGTTTGAGAGGGAATGCGAGACGACGGTAACAGAGGAGAGAGACGGAAGAGGCCGGGAGTGGTGGGAGAGTTGGGAAACCTTGTTGAAACTGAGACGAGGAGAGAACCAGAATGGCTGGTACACTTGCCAGGATTTAACGGCGCTTAACGGCAGCGTTGTTAGGTTATGGGATGGTACCTTCACCACACAACCCAGTGACAACACAAGCTGTGTTCTTGTATGGTAA

>Glyma17g05170.1   sequence type=predicted peptide   gene model=Glyma17g05170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNAVSPLEAQAFNYLSFGFLSNFWTWLALTFWRTRTPTSELLPPPDDPIHDESESDPVAVPARVPIPFAVDVDGARKGKFTLCYEDEFERECETTVTEERDGRGREWWESWETLLKLRRGENQNGWYTCQDLTALNGSVVRLWDGTFTTQPSDNTSCVLVW*







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