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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G03140 | AT | Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr2:942000-950223 FORWARD LENGTH=1883 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| KOG1838 | KOG | Alpha/beta hydrolase | JGI | ISS | |
| PTHR10794 | Panther | YHET-RELATED ALPHA/BETA HYDROLASE DOMAIN CONTAINING | JGI | ISS | |
| PTHR10794:SF8 | Panther | ALPHA/BETA HYDROLASE DOMAIN CONTAINING PROTEIN 1,3 | JGI | ISS | |
| PF02517 | PFAM | CAAX amino terminal protease family | JGI | ISS | |
| UniRef100_F4IS89 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alpha/beta-hydrolases-like protein n=1 Tax=Arabidopsis thaliana RepID=F4IS89_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233F50E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F50E related cluster n=1 Tax=unknown RepID=UPI000233F50E | SoyBase | E_val: 0 | ISS |
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Glyma17g05080 not represented in the dataset |
Glyma17g05080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g17413 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g045900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g05080.1 sequence type=CDS gene model=Glyma17g05080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGGTGCTGGCGCTAACTTCCTTTGCACCCGCCGCGAATCCCTTTCGATTTCGACCCCGCGCGTTCTGTCGCCGTAGGCTCAAAATCAATAACTCTCTCCCACCGCCTCCTTCACCCGCAGTTCCTTTCGAGAATCTCTTCCACAGCTTAATAACTCAGTTCCCTTCCGTCAACTCACTCAATTTCATTACTCCCGCTCTCGGTTTCGCTTCCGGCGTCGCTCTCTTCTTCTCCTCGCGCTCCAATGATTCCGATTCTACCCTCTCCGACATCGGAGAGTGGATCCTGTTCGCGAGTCCGACGCCTTTTAACCGGTTCGTGCTGCTGCGGTGCCCTTCTATATCGTTGGAGGGCGAGAGGCTGGTGAGGGAGGAGAGGCACTACGTGAGAGGAGGGAGGATTGAGGTGCGGAGTGGGAGGGAGAGGGAATTGGAGGAGCTCAGTTATCAGAGGGTGTGTGTGAGTGCTGCTGATGGAGGTGTTGTTTCTTTGGATTGGCCTGATAACTTGCAGTTGGAAGAGGAACGTGGATTGGACACTACTCTCTTGCTCGTTCCCGGCACGCCGCAAGGGAGCATGGACCCCAATGTGAGGTTGTTTGTGGTCGAAGCTCTCAGTAGGGGGTTCTTCCCTGTTGTCATGAATCCCAGAGGATGCGCTGCTTCGCCTCTCACCACTCCCCGGTTATTTACTGCTGCTGACAGCGACGATATCTGCATAGCTATAATGTACATCAACAATGCAAGACCATGGACAACCTTGATGGGTGTTGGATGGGGATATGGTGCAAACATGCTGACAAAGTACCTTGCAGAGGTTGGGGAAAGAACACCATTGACAGCTGTCACATGTATAGACAATCCTTTTGATTTAGATGAAGCTACAAGGTCCTCTCCTTACCACATTGTTACTGATCAGAAACTCACTGATGGACTGATAGATATTCTACAAACCAATAAGGCACTATTCCAAGGCAAAACCAAAGGTTTTGATGTGGAAAAAGCTCTGTTGGCAAAATCTGTACGTGATTTTGAAGAAGCAATATCTATGGTATCTTATGGGTTTGGGGCTATAGAAGATTTTTATTCAAAATCCAGCACAAGAAATATGATTAGGGATGTTAAAATCCCTGTTCTCTTTATACAGAGTGATAATGGGATGGTTCCCGTATTCTCAGTTCCACGCAACCTGATTGCAGAAAATCCATTCACAAGTCTGCTCCTATGTTCTTGTTTGCCTTCAAGTGGTACTGATACCCACATGTCTGCTTTATCATGGTGTCAGCTTCTAACAATTGAGTGGCTCACAGCAGTGGAGCTGGGACTCTTGAAGGGCCGTCATCCTCTTCTGACAGATATAGATGTTAGCATAAATCCTTCTAAAGGATTAGTTGTTGTCGAAGAAGTAAGGTCAAATAAGGATGCTAAAGTTGGCACACTGTTGGATCTTACTCGGTCAGATGCATTTAATGGATACTCTGCCGATCCCACTAAAGATTTGCTTGAAGAAAATGAGAATAACACTGGTCTCCAATTTAATTCCCAACAAGGTCTAAAACGGAACTTTGAGCAGGATGATATGAATTTACAGGTAAAAGATGGCCCATTACAGCAGACTAGATCCAGTGATGCAGATTTAATTGAAGAGGAGAATGTTGTCTCGGCAGATAGTGAACATGGTCAAGTTCTACAGACAGCACAAGTGGTAATAAATATGCTAGATATTACCATGCCTGGTACTCTAACAGAAGAGAGGAAGAACAAGGTGTTAACTGCTGTGGGTCAAGGAGAGACACTCATGAAAGCTTTAGAGGATGCTGTTCCAGAAGATGTCCGTGGAAAGTTAACAGATGCAGTGACTGGAATTTTGCATGCAAGGGGCTCTAAGTTGAAGGTAGATAGGATTCTTAATATTTCTCAGGCTCCTGAATCCGTATCAGGGCAGAAGAACCAAGAAAAATTCAGAGTATCTGGTGCAGAAGTTATGGTTGAAGATCAGCCCTCTGTGAATCAGATGAAAAAGACTAGTAGTCCTATAGATGGCTCTGATGATGCTCCAGGTAGCATTGGCAAGCTTGCTGAAGGAACAGAAACAGAAGTTATTCCCATAGAGAAATCACCAAATTCTACAAATTTAGCCCAGTCTCAAGAATCAAATGATGAAGTTAGTTCTTCTGGTTCTTTAAGGAAGGAAACAGACGAGTCTAATGATAATAATGACACAAATGAGGAATCAAAAGGAAAATCTGTTCCTGATATTGATCATATTAAGAATGGATTGGAAACAGGCTCTAAACCATACACTCCTGGGCTTCCTGATGGAGCAGGTGGCTTTGAATCAGCAGCTGTGGGTGAGCAGAAAAGCCAAAACAGTGGAATAGCTCAAGCAGACCCAAAGGAGGAAAACACTATCCTGAAGGACGAGCAGAAAAGTCAGGATTTCTCTAGCGATCATAGTAAAAATACTTCAACTGATGCAAAAGAAGAACCCTCTTCGCCTTCTATGTCCTCTGAGCACCAAACAATAGAAAGGGAAGGTAATGATAGTGAGAAAAAAGATAATAAGAATATGCAGCATGTTTCACACCAGACCCACTCTAACAATTTGGCTTCTAATGCCCCTGCCTTCAGTGTTTCTCAAGCATTGGATGCCTTGGCAGGGATGGATGATTCCACCCAAGTGGCTGTTAATAGTGTTTTTGGTGTGATAGAAAATATGATATCTCAGCTTGAGCAGAGCTCGGAGAATGAAGAAGTCGAGGATGGAAAAGATGTTGAACAGAAGATAGAAGAAAAACAAAAAACTAATAGGCAAACAAAGGATTCCAACACATCTGCTGATCCTTCAGTAGATGATCACCACAATGATATGCACTTGAATAATGGTTCTTGTCATACAGAGGAACAACCATCTCAAAGTCTTAGTGAAATTAATGGGAACCGTATATTCAATGCTCAAAGTTGTAACTCTAATGATCACCTAGTTCAGAAGGAAAATAATACAAATACTCAACTGATTGACAAAAGATTTCTCATTGGTAAATGGGATGGACACAGACACATGGATAGGATGCCAGAGTTCATAGCTGGTGGTTCGTACGGGGGCTCTCCTTACAATGAAAATTTCCATAAATATCTTGTTTCAAAGATTCCTATCAAACCACTTGATTTAGGCACAACAACTGCATTATTGCTTGACTATTTCCCAGAAGAAGGTCAATGGAAACTTTTTGAACAACCACAAAACATGGAAATTGCTTCTTCTCATACTGAAACTAGTGAAGAGGCTGGGCCCAAGATGAAGGCTCCCTCCTCTGCAAAATCTTCTAATGCAGAGAAATATATTGAACCACCATATGTAATATTAGATGCTGAAAAGCAACAAGAACCTGTCAAAGAGTTCATTACAACAGACACAGAAAACAGAATGACTGACACCAGTGATGACAGGTCAGATGAATTGATGCAATTTGTGAAACAGAGTGTGTTACATTCTTTGAAGATGGAAGTTAGTCGCAAGCTGAATGCTTCAGAAATGATAGAAATGAAGTCAAAGCTTGCTGAAGATATGGAACATGTGGCAAATGCAATTTCAAAAGCTGTTGTACATAGCAAGGTGCAACAACTATATACTGAAGAAAGCAAGGTGCAACAACTATATACTGAAGAAAGCAAGGTGCAACAACTATATACTGAAATTCAAGGTCGTAATGTTGAGGGGGCTATAGAAAAGGTAGGTACTCTTGAAGGGGAGCATGTCATTAATGTAATTTCTTCCTCCATTCAGCAAACAGACTGCCTGAGAAAAGTGGTTCCTGTTGGTGTTCTTGCTGGGTCCATCTTAGCTTCCTTGAGGAAATATTTTAATGTAACTACACTTCAAGATGATCACAGAAGATCTCTGATCCATGATGATGAGGAAAAACCTAGCACGAAGAATTATGGCAATGAAGGTGTCACAGAGATAGATCAAGTACCTGACGAGAAAACTAGTTTGGATCATCCTATTCAGACAGAGAGAATAGAAAGTGCATCAAAAGATACTAGCAAAAATACTGTCATGGTTGGCGCTGTTACAGCTGCTCTTGGGGCTTCTGCTTTATTCATGCAACAGAAGGATCCCCAACAAGAAAATGAAACCGCTGAAAGCTCATCCACATCTCTGAAAATGAATAATTGCCATAAAAAAGAGCCAGAACGACTTCAGGAGGAGGTCTCTGAGAAGAACCAGAATAACATAGTCACAAGCCTTGCTGAGAAAGCCATGTCAGTTGCTGGTCCAGTTGTACCTACTAAAGAAGATGGTGAAGTGGATCAAGAAAGACTGGTCGCAATGCTTGCTGATTTAGGACATAGAGGTGGCTTGTTGAGGCTAGTTGGAAAGATTGCTTTGCTATGGGGTGGTATACGTGGTGCAATGAGTTTGACGGACAGGCTTCTCTCATTCTTACGTATTGCTGAACGCCCTTTGTTTCAGAGGATTTTTGGGTTTGTTGGCATGACCCTTGTTCTATGGTCTCCTGTTGCCATTCCATTACTTCCAACAATTGTTCAGAGCTGGACAACAAAAACTTCTTCCGTAATAGCTGAGTTTGCTTGCATTGTTGGCCTGTACACTGCTATAGTAATACTTGTTATGTTATGGGGGGAAAGAATCCGTGGATACGAAAATGCATTTCAACAGTATGGGCTGGACTTGACATCACCACAAAAGCTATTTGAGTTCTTGAAAGGCTTGGTTGGTGGGGTCATCTTCATTTTTTCAATCCATGTTGTGAATGCATTACTTGGTTGTGCAAGTTTCTCTTGGCCTCATATTCCAACTTCTTTAGATGCCATAACTTGGCTAAAAGTGTATGGACATATGGGTCTGGTAGTTGTTCAAGGAACTGTGATGGCAAGTGCTATTGCAGTGGTGGAAGAATTGCTTTTTAGGTCATGGTTGCCCCAGGAAATTGAAGTTGATCTTGGATATCATCAGGGAATTATTATTTCAGGGCTGGCATTTTCTTTCTTGCAGAGGTCTCTGCAAGCAATACCTGGACTTTGGCTTTTGTCTATGTCTTTGTCAGGTGCCCGACAGAGAAATGGAGGTAGCCTCTTCATCCCCATTGGGCTACGCACAGGAATGATGGCATCCACTTTTATGTTGCAAAAGGGTGGATTTTTAACATATCATAATAAGTGCAACCTTCCTCTCTGGATAATCGGGAACCATCCTTTTCAACCATTTAGTGGTTTAGTTGGTTTGGTATTTTCTTTGTCATTGGCAATACTTCTCTACCCCAGACAGACTTTACAAAGAAAGGAGGCTCAGGAATAA
>Glyma17g05080.1 sequence type=predicted peptide gene model=Glyma17g05080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLVLALTSFAPAANPFRFRPRAFCRRRLKINNSLPPPPSPAVPFENLFHSLITQFPSVNSLNFITPALGFASGVALFFSSRSNDSDSTLSDIGEWILFASPTPFNRFVLLRCPSISLEGERLVREERHYVRGGRIEVRSGRERELEELSYQRVCVSAADGGVVSLDWPDNLQLEEERGLDTTLLLVPGTPQGSMDPNVRLFVVEALSRGFFPVVMNPRGCAASPLTTPRLFTAADSDDICIAIMYINNARPWTTLMGVGWGYGANMLTKYLAEVGERTPLTAVTCIDNPFDLDEATRSSPYHIVTDQKLTDGLIDILQTNKALFQGKTKGFDVEKALLAKSVRDFEEAISMVSYGFGAIEDFYSKSSTRNMIRDVKIPVLFIQSDNGMVPVFSVPRNLIAENPFTSLLLCSCLPSSGTDTHMSALSWCQLLTIEWLTAVELGLLKGRHPLLTDIDVSINPSKGLVVVEEVRSNKDAKVGTLLDLTRSDAFNGYSADPTKDLLEENENNTGLQFNSQQGLKRNFEQDDMNLQVKDGPLQQTRSSDADLIEEENVVSADSEHGQVLQTAQVVINMLDITMPGTLTEERKNKVLTAVGQGETLMKALEDAVPEDVRGKLTDAVTGILHARGSKLKVDRILNISQAPESVSGQKNQEKFRVSGAEVMVEDQPSVNQMKKTSSPIDGSDDAPGSIGKLAEGTETEVIPIEKSPNSTNLAQSQESNDEVSSSGSLRKETDESNDNNDTNEESKGKSVPDIDHIKNGLETGSKPYTPGLPDGAGGFESAAVGEQKSQNSGIAQADPKEENTILKDEQKSQDFSSDHSKNTSTDAKEEPSSPSMSSEHQTIEREGNDSEKKDNKNMQHVSHQTHSNNLASNAPAFSVSQALDALAGMDDSTQVAVNSVFGVIENMISQLEQSSENEEVEDGKDVEQKIEEKQKTNRQTKDSNTSADPSVDDHHNDMHLNNGSCHTEEQPSQSLSEINGNRIFNAQSCNSNDHLVQKENNTNTQLIDKRFLIGKWDGHRHMDRMPEFIAGGSYGGSPYNENFHKYLVSKIPIKPLDLGTTTALLLDYFPEEGQWKLFEQPQNMEIASSHTETSEEAGPKMKAPSSAKSSNAEKYIEPPYVILDAEKQQEPVKEFITTDTENRMTDTSDDRSDELMQFVKQSVLHSLKMEVSRKLNASEMIEMKSKLAEDMEHVANAISKAVVHSKVQQLYTEESKVQQLYTEESKVQQLYTEIQGRNVEGAIEKVGTLEGEHVINVISSSIQQTDCLRKVVPVGVLAGSILASLRKYFNVTTLQDDHRRSLIHDDEEKPSTKNYGNEGVTEIDQVPDEKTSLDHPIQTERIESASKDTSKNTVMVGAVTAALGASALFMQQKDPQQENETAESSSTSLKMNNCHKKEPERLQEEVSEKNQNNIVTSLAEKAMSVAGPVVPTKEDGEVDQERLVAMLADLGHRGGLLRLVGKIALLWGGIRGAMSLTDRLLSFLRIAERPLFQRIFGFVGMTLVLWSPVAIPLLPTIVQSWTTKTSSVIAEFACIVGLYTAIVILVMLWGERIRGYENAFQQYGLDLTSPQKLFEFLKGLVGGVIFIFSIHVVNALLGCASFSWPHIPTSLDAITWLKVYGHMGLVVVQGTVMASAIAVVEELLFRSWLPQEIEVDLGYHQGIIISGLAFSFLQRSLQAIPGLWLLSMSLSGARQRNGGSLFIPIGLRTGMMASTFMLQKGGFLTYHNKCNLPLWIIGNHPFQPFSGLVGLVFSLSLAILLYPRQTLQRKEAQE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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