SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33250 | AT | Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 3K | chr4:16039066-16040617 REVERSE LENGTH=226 | SoyBase | E_val: 1.00E-126 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational initiation | SoyBase | N/A | ISS |
| GO:0006446 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of translational initiation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005852 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation initiation factor 3 complex | SoyBase | N/A | ISS |
| GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
| GO:0043022 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribosome binding | SoyBase | N/A | ISS |
| KOG3252 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR13022 | Panther | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 | JGI | ISS | |
| PF03399 | PFAM | SAC3/GANP/Nin1/mts3/eIF-3 p25 family | JGI | ISS | |
| PF10075 | PFAM | COP9 signalosome, subunit CSN8 | JGI | ISS | |
| UniRef100_G7JS43 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Medicago truncatula RepID=G7JS43_MEDTR | SoyBase | E_val: 3.00E-152 | ISS |
| UniRef100_I1MS38 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MS38_SOYBN | SoyBase | E_val: 3.00E-168 | ISS |
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Glyma17g05030 not represented in the dataset |
Glyma17g05030 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g17450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g045500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g05030.2 sequence type=transcript gene model=Glyma17g05030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATATATATTTATTACCTTTCCCTTACTCCTTCACTCACTCAGCCTAATTAATAAAAGGGGAAGTTTTTGCATAGTGTTGAGTTTTGTCGCAGCATTCCATACGAGGCCGAAGGGAAGAGTTTTTGTTGGGTTTGGGAGGCTAAGTAGGGTTTGCGTTGAGAAAGAGAGAGATGGGAAGAGAAAAGGAGACAACAAAGGTAGCTTACACAGTGGAGCAGCTTGTAGCCTTCAATCCATACAATCCCGATATTCTTCCAGATCTCGAAAACTATGTCAACGACCAGGTTCCTTCTCTATCTTCTTTTTCCTAAATCCAAAAACCTAGGTTTGAAATGAAACCCAATTTCTGTTTCCTTTTAGGTTTCGTCGCAAACTTACAGCCTGGACGCGAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCAGAGAAAATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAAATGGAGGAGCAGTTCAAGACTTTGATTGTCCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCAGCAAAAAGTCGTCATATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGATATGCAATCCATGTCCTTTCCTTGACTTACCAAAGGATTCCTAGAACTGTGCTTGCTGAGGCTATTAACATAGAAGGTTTATCCTTGGACAAATTCATTGAACATCAAGTAGCCAACAGTGGTTGGGTTGTTGAGAAAAGCCAAGGCAGGGGTCAACTCGTTGTCCTCCCTAGAACTGAATTTAATGACCCAGCTTTGAAGAAAAATGCTGCAGACAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGTTGATTTTTCTATGGTAGACTGCCAATTTTCTATCCTGAAGGAGATTATGCGGATATTATATCAGTTGGAGCAACACCTTCCCTTCCCCTTGGATGCTTCAATTTGAGAATTAGTGGACAGCTATTGTAGTTTACTCATGTTTTGCATACCTGTCTGAAAATTAATTTGCTTTGCTATGCTTTATTATTCGTTGAACAGATGGCCTGTTCTCTATACTGCGTCTATAAGTTCCCTGGCTAGTTATGAGTAGTAGGATAAAAATATGAGGAAAGAAGAAATACAGATTGGAATAAGGAGTAGAGCAAGGTTCACTTATATGCTCGGTATGGTACTGGGGCAAAATTGAACTCGATGCAGTCCAGGTTGCAATCTTTCTCCAACAATTGTCACCCAAACAGTAAACT >Glyma17g05030.3 sequence type=transcript gene model=Glyma17g05030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATATATATTTATTACCTTTCCCTTACTCCTTCACTCACTCAGCCTAATTAATAAAAGGGGAAGTTTTTGCATAGTGTTGAGTTTTGTCGCAGCATTCCATACGAGGCCGAAGGGAAGAGTTTTTGTTGGGTTTGGGAGGCTAAGTAGGGTTTGCGTTGAGAAAGAGAGAGATGGGAAGAGAAAAGGAGACAACAAAGGTAGCTTACACAGTGGAGCAGCTTGTAGCCTTCAATCCATACAATCCCGATATTCTTCCAGATCTCGAAAACTATGTTTCGTCGCAAACTTACAGCCTGGACGCGAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCAGAGAAAATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAAATGGAGGAGCAGTTCAAGACTTTGATTGTCCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCAGCAAAAAGTCGTCATATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGATATGCAATCCATGTCCTTTCCTTGACTTACCAAAGGATTCCTAGAACTGTGCTTGCTGAGGCTATTAACATAGAAGGTTTATCCTTGGACAAATTCATTGAACATCAAGTAGCCAACAGTGGTTGGGTTGTTGAGAAAAGCCAAGGCAGGGGTCAACTCGTTGTCCTCCCTAGAACTGAATTTAATGACCCAGCTTTGAAGAAAAATGCTGCAGACAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGTTGATTTTTCTATGGTAGACTGCCAATTTTCTATCCTGAAGGAGATTATGCGGATATTATATCAGTTGGAGCAACACCTTCCCTTCCCCTTGGATGCTTCAATTTGAGAATTAGTGGACAGCTATTGTAGTTTACTCATGTTTTGCATACCTGTCTGAAAATTAATTTGCTTTGCTATGCTTTATTATTCGTTGAACAGATGGCCTGTTCTCTATACTGCGTCTATAAGTTCCCTGGCTAGTTATGAGTAGTAGGATAAAAATATGAGGAAAGAAGAAATACAGATTGGAATAAGGAGTAGAGCAAGGTTCACTTATATGCTCGGTATGGTACTGGGGCAAAATTGAACTCGATGCAGTCCAGGTTGCAATCTTTCTCCAACAATTGTCACCCAAACAGTAAACT
>Glyma17g05030.1 sequence type=CDS gene model=Glyma17g05030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGAGAAAAGGAGACAACAAAGGTAGCTTACACAGTGGAGCAGCTTGTAGCCTTCAATCCATACAATCCCGATATTCTTCCAGATCTCGAAAACTATGTCAACGACCAGGTTTCGTCGCAAACTTACAGCCTGGACGCGAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCAGAGAAAATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAAATGGAGGAGCAGTTCAAGACTTTGATTGTCCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCAGCAAAAAGTCGTCATATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGATATGCAATCCATGTCCTTTCCTTGACTTACCAAAGGATTCCTAGAACTGTGCTTGCTGAGGCTATTAACATAGAAGGTTTATCCTTGGACAAATTCATTGAACATCAAGTAGCCAACAGTGGTTGGGTTGTTGAGAAAAGCCAAGGCAGGGGTCAACTCGTTGTCCTCCCTAGAACTGAATTTAATGACCCAGCTTTGAAGAAAAATGCTGCAGACAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGTTGA >Glyma17g05030.2 sequence type=CDS gene model=Glyma17g05030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAAATGGAGGAGCAGTTCAAGACTTTGATTGTCCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCAGCAAAAAGTCGTCATATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGATATGCAATCCATGTCCTTTCCTTGACTTACCAAAGGATTCCTAGAACTGTGCTTGCTGAGGCTATTAACATAGAAGGTTTATCCTTGGACAAATTCATTGAACATCAAGTAGCCAACAGTGGTTGGGTTGTTGAGAAAAGCCAAGGCAGGGGTCAACTCGTTGTCCTCCCTAGAACTGAATTTAATGACCCAGCTTTGAAGAAAAATGCTGCAGACAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGTTGA >Glyma17g05030.3 sequence type=CDS gene model=Glyma17g05030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGAGAAAAGGAGACAACAAAGGTAGCTTACACAGTGGAGCAGCTTGTAGCCTTCAATCCATACAATCCCGATATTCTTCCAGATCTCGAAAACTATGTTTCGTCGCAAACTTACAGCCTGGACGCGAATCTCTGCCTTCTTCGCCTCTACCAGTTTGAACCAGAGAAAATGAGTTCCCAGATTGTGGCCCGCATATTGGTCAAGGCTCTCATGGCAATGCCGGCGCCAGATTTCAGCCTTTGTCTCTTTTTGATTCCAGAACGCGTGCAAATGGAGGAGCAGTTCAAGACTTTGATTGTCCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCAGCAAAAAGTCGTCATATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGATATGCAATCCATGTCCTTTCCTTGACTTACCAAAGGATTCCTAGAACTGTGCTTGCTGAGGCTATTAACATAGAAGGTTTATCCTTGGACAAATTCATTGAACATCAAGTAGCCAACAGTGGTTGGGTTGTTGAGAAAAGCCAAGGCAGGGGTCAACTCGTTGTCCTCCCTAGAACTGAATTTAATGACCCAGCTTTGAAGAAAAATGCTGCAGACAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGTTGA
>Glyma17g05030.1 sequence type=predicted peptide gene model=Glyma17g05030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGREKETTKVAYTVEQLVAFNPYNPDILPDLENYVNDQVSSQTYSLDANLCLLRLYQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKSRHIVEAVPGFEQAIQGYAIHVLSLTYQRIPRTVLAEAINIEGLSLDKFIEHQVANSGWVVEKSQGRGQLVVLPRTEFNDPALKKNAADSVPLEHITRIFPILS* >Glyma17g05030.2 sequence type=predicted peptide gene model=Glyma17g05030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKSRHIVEAVPGFEQAIQGYAIHVLSLTYQRIPRTVLAEAINIEGLSLDKFIEHQVANSGWVVEKSQGRGQLVVLPRTEFNDPALKKNAADSVPLEHITRIFPILS* >Glyma17g05030.3 sequence type=predicted peptide gene model=Glyma17g05030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGREKETTKVAYTVEQLVAFNPYNPDILPDLENYVSSQTYSLDANLCLLRLYQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKSRHIVEAVPGFEQAIQGYAIHVLSLTYQRIPRTVLAEAINIEGLSLDKFIEHQVANSGWVVEKSQGRGQLVVLPRTEFNDPALKKNAADSVPLEHITRIFPILS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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