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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G43230 | AT | Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD-type zinc finger family protein | chr3:15207776-15209599 FORWARD LENGTH=485 | SoyBase | E_val: 0 | ISS |
| GO:0006914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: autophagy | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0035091 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG1843 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR15629 | Panther | SH3YL1 PROTEIN | JGI | ISS | |
| PF01363 | PFAM | FYVE zinc finger | JGI | ISS | |
| PF04366 | PFAM | Family of unknown function (DUF500) | JGI | ISS | |
| UniRef100_B9RR35 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9RR35_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MS36 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MS36_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g05010 not represented in the dataset |
Glyma17g05010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g17500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g045300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g05010.2 sequence type=transcript gene model=Glyma17g05010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGTGTATAAACCGAACCCGAAACAATAGCATACACGAAGTGTGGCAGTTACGCAAGTACATACTTTCCGTCTCAATTCAATTTCCCATAAACTTTCTTTGAGGTTCTATCGCTTCGTTAAATTCTCTTTTCTTCTTCTGCCCCCTTTTCCACTTCAATTAGGTATATCGCCGATTCGATTACCAATTTGCTTAAACTCAATCAAGCTTCGCAGCGTCAATCATTCTATTAGAGTTTCGGATTGCTATATTTAAGTAGTTGTAGTGTAGTTTGATTGGTAAATGGCATCCTCCGATGGTAGAGTTACGTATTCTTCACTATCTAAGCTAGAAAACGAGAATACCCATTTTGGCTACGATGATATGAATCATCATGGTGAATCTGTGTGGTCTGAGCCTATGCCTGGCACCCCGTGTGGCCAATTAGGCCCAACGTTCTCTAACAAAGAGTCATTGTATCAGTTTCCCTCCGAGGATGATGACTTGTTTGATGGAGGTTATGAATCAGGTGATGATGCACGCGGTATCGTACCCTCTAACAGGCCTCCTGAGGTGAACTTGAAGAATGTGCTTTCTGGGATCTTTGCTATTTTGACTGGACGGACCAAGGTTCCAAGCATTACTGCAAACCAGCAGCTCCCAAGTTCAAATGTGTCATTTCTTGACTCTGGAAAGAATGGGGATGTTTTCCTTGACTCTTCAGTGTACACACCAAGTGCACCACCGCTTTGTCTGCCTAATGGAAGTGATTATAGTTCTTACAAAGAGGTCTTGGAAGCTGATCCCCCTGAGTGGCTCCCTGATAGTTCTACTACTGTTTGTATGCAGTGTAGTGCTCCTTTTACTGCACTTACCCGGGGTAGACATCATTGCCGGTTTTGTGGGGGGATTTTCTGTCGAACATGTACGAAGGGGCGATGTTTAATGCCTGTTGGGTTCAGGGAAAGGAATCCCCAAAGGGTTTGCGATGCCTGCTATGATCGGCTTGATCCTTTACAGGGTGTTCTTATCAACACCATAAGCAATGCTGCGCAGGGGGCTAAGCATGATGTCATGGACTGGACTTGTGCTAGAGGATGGATTAATCTTCCTATTGGTTTATCTATGGAGCATGAGATTTATAAAGCATCTAATACATTGAGAAACTACTGTCAGGTGGCCAAATCCAATCCTGAGAAGTCTATCCCTTTAACTGTTCTTAAAAGTGCCAAGGGCTTAGCAATTTTAACAGTTGCTAAAGCTGGTGCACTGGTCTCTTACAAACTGGGCACTGGTTTGGTTGTTGCTCGAAGATCAGATGGATCATGGTCTGCACCGTCAGCAATATTCTCCCTGGGTTTAGGATGGGGTGCTCAGATTGGTGGTGAACTTATGGATTTTATAGTTGTTCTTCGTGATATGAAAGCTGTAAAGACATTCTGCAGTCATATGCATTTTTCTCTTGGTGCTGGTTGTAGTGCTGCAGCAGGGCCTGTTGGGAGAGTGCTTGAAGCAGATATTCGTGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAGGTGCATTTGTGGGAGTTTCTTTGGAAGGAAATATAGTTGCAACCAGGATGGATGCCAATTTGCGCTTCTATGGTGATCCTTACCTCACCACATCTGATATTCTACTGGGAATGGTGGACAGACCAAAGGCTGCTCAACCCATGTATGCCAGTCTTCAAGAACTATATTCCTGTTTACGATTCTAAGCTGGTTTCAATTGCAGAATTGCAAGTGATGTGATAAATAGTGCCTGATGTATATACAGTTCTAGTTCGTGCATGGATTTGTGAAATGTAATTCCAGAAGTCCTCTATATTTGGTTCATATGGATGAGGGATCTCCTCATAATTCGGTTATACATCATATATTTATATTTATTAAAAATGATGCAAATATCCAATACACGAATTTATAATGTGAATATGTTGAACTAATTGTACATAGAGAATCGGTGAAATAGGTTCTATTCGTTTGCCGAATTCTTTTGTTCTTGCTGAGGGATTTTTCTGGAATTGGATTTTCAAGTAGGTAATATTTAAAATTTTTGAGTAAG
>Glyma17g05010.1 sequence type=CDS gene model=Glyma17g05010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCCTCCGATGGTAGAGTTACGTATTCTTCACTATCTAAGCTAGAAAACGAGAATACCCATTTTGGCTACGATGATATGAATCATCATGGTGAATCTGTGTGGTCTGAGCCTATGCCTGGCACCCCGTGTGGCCAATTAGGCCCAACGTTCTCTAACAAAGAGTCATTGTATCAGTTTCCCTCCGAGGATGATGACTTGTTTGATGGAGGTTATGAATCAGGTGATGATGCACGCGGTATCGTACCCTCTAACAGGCCTCCTGAGGTGAACTTGAAGAATGTGCTTTCTGGGATCTTTGCTATTTTGACTGGACGGACCAAGGTTCCAAGCATTACTGCAAACCAGCAGCTCCCAAGTTCAAATGTGTCATTTCTTGACTCTGGAAAGAATGGGGATGTTTTCCTTGACTCTTCAGTGTACACACCAAGTGCACCACCGCTTTGTCTGCCTAATGGAAGTGATTATAGTTCTTACAAAGAGGTCTTGGAAGCTGATCCCCCTGAGTGGCTCCCTGATAGTTCTACTACTGTTTGTATGCAGTGTAGTGCTCCTTTTACTGCACTTACCCGGGGTAGACATCATTGCCGGTTTTGTGGGGGGATTTTCTGTCGAACATGTACGAAGGGGCGATGTTTAATGCCTGTTGGGTTCAGGGAAAGGAATCCCCAAAGGGTTTGCGATGCCTGCTATGATCGGCTTGATCCTTTACAGGGTGTTCTTATCAACACCATAAGCAATGCTGCGCAGGGGGCTAAGCATGATGTCATGGACTGGACTTGTGCTAGAGGATGGATTAATCTTCCTATTGGTTTATCTATGGAGCATGAGATTTATAAAGCATCTAATACATTGAGAAACTACTGTCAGGTGGCCAAATCCAATCCTGAGAAGTCTATCCCTTTAACTGTTCTTAAAAGTGCCAAGGGCTTAGCAATTTTAACAGTTGCTAAAGCTGGTGCACTGGTCTCTTACAAACTGGGCACTGGTTTGGTTGTTGCTCGAAGATCAGATGGATCATGGTCTGCACCGTCAGCAATATTCTCCCTGGGTTTAGGATGGGGTGCTCAGATTGGTGGTGAACTTATGGATTTTATAGTTGTTCTTCGTGATATGAAAGCTGTAAAGACATTCTGCAGTCATATGCATTTTTCTCTTGGTGCTGGTTGTAGTGCTGCAGCAGGGCCTGTTGGGAGAGTGCTTGAAGCAGATATTCGTGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAGGTGCATTTGTGGGAGTTTCTTTGGAAGGAAATATAGTTGCAACCAGGATGGATGCCAATTTGCGCTTCTATGGTGATCCTTACCTCACCACATCTGATATTCTACTGGGAATGGTGGACAGACCAAAGGCTGCTCAACCCATGTATGCCAGTCTTCAAGAACTATATTCCTGTTTACGATTCTAA >Glyma17g05010.2 sequence type=CDS gene model=Glyma17g05010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCCTCCGATGGTAGAGTTACGTATTCTTCACTATCTAAGCTAGAAAACGAGAATACCCATTTTGGCTACGATGATATGAATCATCATGGTGAATCTGTGTGGTCTGAGCCTATGCCTGGCACCCCGTGTGGCCAATTAGGCCCAACGTTCTCTAACAAAGAGTCATTGTATCAGTTTCCCTCCGAGGATGATGACTTGTTTGATGGAGGTTATGAATCAGGTGATGATGCACGCGGTATCGTACCCTCTAACAGGCCTCCTGAGGTGAACTTGAAGAATGTGCTTTCTGGGATCTTTGCTATTTTGACTGGACGGACCAAGGTTCCAAGCATTACTGCAAACCAGCAGCTCCCAAGTTCAAATGTGTCATTTCTTGACTCTGGAAAGAATGGGGATGTTTTCCTTGACTCTTCAGTGTACACACCAAGTGCACCACCGCTTTGTCTGCCTAATGGAAGTGATTATAGTTCTTACAAAGAGGTCTTGGAAGCTGATCCCCCTGAGTGGCTCCCTGATAGTTCTACTACTGTTTGTATGCAGTGTAGTGCTCCTTTTACTGCACTTACCCGGGGTAGACATCATTGCCGGTTTTGTGGGGGGATTTTCTGTCGAACATGTACGAAGGGGCGATGTTTAATGCCTGTTGGGTTCAGGGAAAGGAATCCCCAAAGGGTTTGCGATGCCTGCTATGATCGGCTTGATCCTTTACAGGGTGTTCTTATCAACACCATAAGCAATGCTGCGCAGGGGGCTAAGCATGATGTCATGGACTGGACTTGTGCTAGAGGATGGATTAATCTTCCTATTGGTTTATCTATGGAGCATGAGATTTATAAAGCATCTAATACATTGAGAAACTACTGTCAGGTGGCCAAATCCAATCCTGAGAAGTCTATCCCTTTAACTGTTCTTAAAAGTGCCAAGGGCTTAGCAATTTTAACAGTTGCTAAAGCTGGTGCACTGGTCTCTTACAAACTGGGCACTGGTTTGGTTGTTGCTCGAAGATCAGATGGATCATGGTCTGCACCGTCAGCAATATTCTCCCTGGGTTTAGGATGGGGTGCTCAGATTGGTGGTGAACTTATGGATTTTATAGTTGTTCTTCGTGATATGAAAGCTGTAAAGACATTCTGCAGTCATATGCATTTTTCTCTTGGTGCTGGTTGTAGTGCTGCAGCAGGGCCTGTTGGGAGAGTGCTTGAAGCAGATATTCGTGCTGGTGACAGAGGCTCTGGCATGTGTTACACTTACAGTTGCAGTAAAGGTGCATTTGTGGGAGTTTCTTTGGAAGGAAATATAGTTGCAACCAGGATGGATGCCAATTTGCGCTTCTATGGTGATCCTTACCTCACCACATCTGATATTCTACTGGGAATGGTGGACAGACCAAAGGCTGCTCAACCCATGTATGCCAGTCTTCAAGAACTATATTCCTGTTTACGATTCTAA
>Glyma17g05010.1 sequence type=predicted peptide gene model=Glyma17g05010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSDGRVTYSSLSKLENENTHFGYDDMNHHGESVWSEPMPGTPCGQLGPTFSNKESLYQFPSEDDDLFDGGYESGDDARGIVPSNRPPEVNLKNVLSGIFAILTGRTKVPSITANQQLPSSNVSFLDSGKNGDVFLDSSVYTPSAPPLCLPNGSDYSSYKEVLEADPPEWLPDSSTTVCMQCSAPFTALTRGRHHCRFCGGIFCRTCTKGRCLMPVGFRERNPQRVCDACYDRLDPLQGVLINTISNAAQGAKHDVMDWTCARGWINLPIGLSMEHEIYKASNTLRNYCQVAKSNPEKSIPLTVLKSAKGLAILTVAKAGALVSYKLGTGLVVARRSDGSWSAPSAIFSLGLGWGAQIGGELMDFIVVLRDMKAVKTFCSHMHFSLGAGCSAAAGPVGRVLEADIRAGDRGSGMCYTYSCSKGAFVGVSLEGNIVATRMDANLRFYGDPYLTTSDILLGMVDRPKAAQPMYASLQELYSCLRF* >Glyma17g05010.2 sequence type=predicted peptide gene model=Glyma17g05010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSDGRVTYSSLSKLENENTHFGYDDMNHHGESVWSEPMPGTPCGQLGPTFSNKESLYQFPSEDDDLFDGGYESGDDARGIVPSNRPPEVNLKNVLSGIFAILTGRTKVPSITANQQLPSSNVSFLDSGKNGDVFLDSSVYTPSAPPLCLPNGSDYSSYKEVLEADPPEWLPDSSTTVCMQCSAPFTALTRGRHHCRFCGGIFCRTCTKGRCLMPVGFRERNPQRVCDACYDRLDPLQGVLINTISNAAQGAKHDVMDWTCARGWINLPIGLSMEHEIYKASNTLRNYCQVAKSNPEKSIPLTVLKSAKGLAILTVAKAGALVSYKLGTGLVVARRSDGSWSAPSAIFSLGLGWGAQIGGELMDFIVVLRDMKAVKTFCSHMHFSLGAGCSAAAGPVGRVLEADIRAGDRGSGMCYTYSCSKGAFVGVSLEGNIVATRMDANLRFYGDPYLTTSDILLGMVDRPKAAQPMYASLQELYSCLRF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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