Glyma17g04930 - SoyBase

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Report for Sequence Feature Glyma17g04930

Feature Type:	gene_model
Chromosome:	Gm17
Start:	3304962
stop:	3308674
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g04930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G26110	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr5:9118239-9119352 REVERSE LENGTH=226	SoyBase	E_val: 5.00E-136	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG3087	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR12209	Panther	O-SIALOGLYCOPROTEIN ENDOPEPTIDASE	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_B9SFH4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: O-sialoglycoprotein endopeptidase, putative n=1 Tax=Ricinus communis RepID=B9SFH4_RICCO	SoyBase	E_val: 2.00E-134	ISS
UniRef100_I1MS27	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MS27_SOYBN	SoyBase	E_val: 6.00E-161	ISS

Expression Patterns of Glyma17g04930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g04930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g044400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g04930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g04930

Limit To All Plant Sequences

>Glyma17g04930.4   sequence type=transcript   gene model=Glyma17g04930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCACAACCCAACAATCATTGCTCAAGAAAAAAGCACTAGCAATCATTGGACCAAAACATAAGAAATATTGCCAACCCACAATAAGAAAGAACGGTGATTCACTGATTCTTATATTTTGTTATTAAATTATTTTTAACAAATTTTATTCATAGAACAAAATAAATCAAAATCAAATATATAATAACGGAAATACTATGGGTTATTTTAGCGTTGTAAATTTTCAATTTTGGGGAAAATGGGGGCGCGGTAATTTTTTTACAACAGAAACAAGCAGTAACAGAGTGGGCTAGGGTTTTTTACCGGGTCGCAAACCCGACCCGCGGAAAAGCCGAACAGCACTCGAAGCAGAACGGCGCGCCTCACGATCATCGATCTTCCCCGGCGAAAACACGATTTTCACCTCTGGCGAACTCGGACAGGGCACAGAAGATCGTGAACTCGTACGATCTTACGAGACAGATCGCGATTTTGACTTCCATGAACACAAGAGATAGTTCTCTCGTTCTGCTCAAGCAAGGAGCTGAAGCTGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTGCTGTATGCTGTGGATCCTGTGTTGCACACTTTAACATTTGAATATGTTGAGGGCACTTCAGTCAAAGATGTGTTTCTTGAATTCGGGTCACATGGTGTTAATAAAGAGAGGCTGGATGATATTGCATTCCAAATTGGTGATACAATTGGAAAGCTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAACATGTTACTAAAGAGTGATACAAAGCAGTTGGTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTACCTGAAGACAAGGCTGTTGATTTGTATGTTCTAGAAAGAGCTCTTATTTCAATGCATTCATCATGTGGGAATGTGATGGATCAGATACTTGCTGCATACAGGAAGTCATCAAAGCAGTGGTCATCCACATTGAACAAGCTGGCACAAGTGCGACAAAGAGGACGGAAGAGGACCATGGTTGGATGAATCTTTATCGAATTTCATTAGAGATATAAAAGAGATGACAACTAAGGATGTTATTAACATAGTGTAATTTTTCTTTACATTGCCTCTCTATTTGCATATTTGTAGTATGGTTATCTCTTCTTACAGTTTATAAAAAATGCGATGACTTTTGAACGTGGTTTATTCCTACTGAGTATGCAACTAACCAACCAAAATTGTTTGAAACTGTTCTGACTGCTTCTGTTGATATGTCCAAGGCTCAAACGTTGTGTTTAGTTGATACTCTATTGGGTGAAGCATCAATAATCATTTTGAAATAGAAAATTGCA

Coding sequences of Glyma17g04930

Limit To All Plant Sequences

>Glyma17g04930.3   sequence type=CDS   gene model=Glyma17g04930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACACAAGAGATAGTTCTCTCGTTCTGCTCAAGCAAGGAGCTGAAGCTAGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAAATCCGTTGTCAAGGAACGATTCTCAAAGAAGTACAGGCATCCAACTTTAGATTCAAAATTGACCCTCAAGCGCTTAAATATGGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTGCTGTATGCTGTGGATCCTGTGTTGCACACTTTAACATTTGAATATGTTGAGGGCACTTCAGTCAAAGATGTGTTTCTTGAATTCGGGTCACATGGTGTTAATAAAGAGAGGCTGGATGATATTGCATTCCAAATTGGTGATACAATTGGAAAGCTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAACATGTTACTAAAGAGTGATACAAAGCAGTTGGTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTACCTGAAGACAAGGCTGTTGATTTGTATGTTCTAGAAAGAGCTCTTATTTCAATGCATTCATCATGTGGGAATGTGATGGATCAGATACTTGCTGCATACAGGAAGTCATCAAAGCAGTGGTCATCCACATTGAACAAGCTGGCACAAGTGCGACAAAGAGGACGGAAGAGGACCATGGTTGGATGA

>Glyma17g04930.4   sequence type=CDS   gene model=Glyma17g04930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACACAAGAGATAGTTCTCTCGTTCTGCTCAAGCAAGGAGCTGAAGCTGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGGACTCCTGTGCTGTATGCTGTGGATCCTGTGTTGCACACTTTAACATTTGAATATGTTGAGGGCACTTCAGTCAAAGATGTGTTTCTTGAATTCGGGTCACATGGTGTTAATAAAGAGAGGCTGGATGATATTGCATTCCAAATTGGTGATACAATTGGAAAGCTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAACATGTTACTAAAGAGTGATACAAAGCAGTTGGTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTACCTGAAGACAAGGCTGTTGATTTGTATGTTCTAGAAAGAGCTCTTATTTCAATGCATTCATCATGTGGGAATGTGATGGATCAGATACTTGCTGCATACAGGAAGTCATCAAAGCAGTGGTCATCCACATTGAACAAGCTGGCACAAGTGCGACAAAGAGGACGGAAGAGGACCATGGTTGGATGA

Predicted protein sequences of Glyma17g04930

Limit To All Plant Sequences

>Glyma17g04930.3   sequence type=predicted peptide   gene model=Glyma17g04930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTRDSSLVLLKQGAEARVFESSFVGRKSVVKERFSKKYRHPTLDSKLTLKRLNMEARCMTKARRLGVWTPVLYAVDPVLHTLTFEYVEGTSVKDVFLEFGSHGVNKERLDDIAFQIGDTIGKLHDGGLIHGDLTTSNMLLKSDTKQLVLIDFGLSFTSTLPEDKAVDLYVLERALISMHSSCGNVMDQILAAYRKSSKQWSSTLNKLAQVRQRGRKRTMVG*

>Glyma17g04930.4   sequence type=predicted peptide   gene model=Glyma17g04930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNTRDSSLVLLKQGAEAEARCMTKARRLGVWTPVLYAVDPVLHTLTFEYVEGTSVKDVFLEFGSHGVNKERLDDIAFQIGDTIGKLHDGGLIHGDLTTSNMLLKSDTKQLVLIDFGLSFTSTLPEDKAVDLYVLERALISMHSSCGNVMDQILAAYRKSSKQWSSTLNKLAQVRQRGRKRTMVG*

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