SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G43300 | AT | Annotation by Michelle Graham. TAIR10: HOPM interactor 7 | chr3:15234235-15245034 REVERSE LENGTH=1758 | SoyBase | E_val: 0 | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0009888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tissue development | SoyBase | N/A | ISS |
| GO:0010638 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0032012 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of ARF protein signal transduction | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0040007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: growth | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0050790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005769 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: early endosome | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005085 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: guanyl-nucleotide exchange factor activity | SoyBase | N/A | ISS |
| GO:0005086 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ARF guanyl-nucleotide exchange factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0929 | KOG | Guanine nucleotide exchange factor | JGI | ISS | |
| PTHR10663 | Panther | GUANYL-NUCLEOTIDE EXCHANGE FACTOR | JGI | ISS | |
| PTHR10663:SF56 | Panther | ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7), G | JGI | ISS | |
| PF01369 | PFAM | Sec7 domain | JGI | ISS | |
| PF09324 | PFAM | Domain of unknown function (DUF1981) | JGI | ISS | |
| UniRef100_B9RR10 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Guanine nucleotide-exchange, putative n=1 Tax=Ricinus communis RepID=B9RR10_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233F508 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F508 related cluster n=1 Tax=unknown RepID=UPI000233F508 | SoyBase | E_val: 0 | ISS |
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Glyma17g04890 not represented in the dataset |
Glyma17g04890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g17610 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g044000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g04890.1 sequence type=CDS gene model=Glyma17g04890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGGAGGTGCCGCCGGGGGTTTCGTCACTCGAGCATTCGATTCAATTCTCAAGGAGTGTTCTTCTGCCAAGAAGTTTCCCGAACTTGAGAAAGCTATTCAGAATTACACAGATATAACGAAAGAGCTCAGCCAGAAAAAGCAGAGTGAGGTCAATCAAGCTGCCCCTTCAGCTGAATCTGGGAGCATGAATGAAACTGAAGGTGGAGTGGCAACTAGGACAGAAGCAGATCAGTCACAGAAGGCTGAGCATGCTTCAGATGACAGGGCTAAGATTGGAAACATTAATGTTGTTTTGGCTAGTGCTGGGAATACACTTGAAGGAGCTGATGCAGAGCTTATTTTAAATCCTCTCCGTCTCGCGTTTGAGACTAAGAACTTGAAAATCCTTGAATCTGCTTTGGATTGTCTTCATAAACTTATTGCGTATGACCATTTGGAGGGAGATCCTGGGTTAGAGGGTGGTAAAAATGTTCCATTGTTTACAGACATTCTAAACATGGTTTGCAGTTGTGTTGACAATTCATCACCTGACAGTACTATTCTCCAAGTGCTGAAGGTTCTTCTTACTGCGGTGGCTTCTACTAAATTCAGAGTACATGGCGAACCTTTACTGGGAGTTATCAGAGTATGCTACAATATTGCTCTGAATAGCAAGAGTCCTATAAACCAAGCAACGTCAAAGGCAATGCTGACACAGATGATCAGCATCACTTTCAGGAGAATGGAAACTGATCCGGTTGAAGCGTCATCTGGTTCCGGTGGGCATGCAATTTCAAAGGCAGCTTCAGCAGAGAATTTAAACACAAAATCCGATGAATCTTCAATGGGAGACTCAAATGAAAAAGAAATGACTTTAGGTGATGCACTTAGTCAAGCCAAGGATGCATCTCCAACATCTCTTGAGGAACTTCAGAATCTTGCTGGAGGTGCTGATATAAAGGGCCTAGAAGCGGTACTGGACAAGGCTGTACATACTGAAGATGGTAAAAAGATTACACGTGGGATTGATTTGGAGAGCATGAGTATAGTACAACGTGATGCTTTGTTGGTATTCCGCACTCTTTGCAAGATGGGTATGAAGGAAGATAATGATGAAGTTACAACGAAGACGAGGATATTGTCTCTTGAGCTTCTTCAGGGTTTGCTGGAGGGAGTCAGCCACTCATTTACAAAGAACTTCCATTTTATTGATTCAGTGAAGGCATATCTTTCATATGCATTGTTACGAGCTTCAGTTTCACAATCCCCTGTTATATTTCAGTATGCAACTGGAATATTCTTGGTGCTGTTATTGCAATTCAGGGAGAGTCTCAAAGGTGAAATAGGCATCTTCTTTCCATTGATTGTTCTTAGACCACTGGATGGATTAGAATTTCCTGTCAACCAAAAACTTAGTGTTCTTCGGATGTTAGAGAAAGTATGTAAGGACCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGGTTACTACTCTGTCCAAAATAGCTCAAGGAACTCAAAATACCGATCCAAATTCTGCTGCTGTTTCTCAAACAGCTTCAATTAAAGGCTCATCACTTCAAGGTCTTGTGAGTGTGCTTAAATCACTAGTTGATTGGGAGCAATCACATAAGGAGTTGGAAAAGTTAAAGAATAATCAACAAGAAGGGATTTCAGCTGGAGATTCTTCTGAAATAAGATCCAGGGAAGATGTAACCAGTGATTTTGAGAAGGCTAAGGCTCATAAATCCACATTGGAGGCTGCCATTGCTGAGTTCAACAGAAAACCAATGAAGGGGGTGGAATATCTAATATCAAATAAGTTGGTGGAAAACACACCTGCTTCAGTTGCTCAATTTTTTAAAAACACTCCCAATTTGGACAAGGCTACAATTGGTGACTATTTAGGTCAACATGAAGAGTTTCCCCTTGCTGTGATGCATGCTTATGTAGATTCCATGAAATTTTCTGGATTTAAATTTGATACTGCAATCAGGGAGTTTCTTAAAGGGTTCCGACTTCCTGGGGAAGCTCAAAAGATAGATCGAATCATGGAAAAGTTTGCAGAGAGATACTGTGCAGACAATCCTGGCCTTTTTAAAAATGCAGATACAGCTTATGTTCTAGCTTATGCTGTTATTATGTTAAATACTGATGCTCATAACCCAATGGTGTGGCCCAAGATGTCCAAGTCAGATTTTGTTCGCATGAATGCCAGGGATGATCCGGATGAATGTGCTCCTAAAGAACTACTAGAAGAGATCTATGATTCCATTGTCAAAGAGGAGATTAAAATGAAAGATGACACATCTTTAATAGGAAAAAGCAGCAGACAGAAACCAGAGGGTGAAGAAGGACGCCTTGTCAGTATTCTTAACCTAGCACTCCCAAAGAGGAAGTCATCCGGAGATGCGAAGTCTGAAAGTGAGGACATCATTAAGAAAACACAAGCTATATTCAGGAATAAAGGGGTGAAAAGAGGAGTTTTCTACACTGCCCAGCAGATTGAACTTGTAAGGCCTATGGTTGAAGCCGTCGGGTGGCCTTTGCTTGCTACTTTTTCTGTAACTATGGAGGAAGGTGAAAATAAGTCTCGTGTTGTTTTGTTGATGGAGGGATTTAAAGCTGGCATACATATTACGTTTGTGCTTGGAATGGATACCATGCGTTATGCATTTCTAACATCTCTGGTCAGGTTTACTTTCTTGCATGCCCCCAAGGAAATGCGCAGTAAAAATGTGGAAGCTTTGCGGACACTGTTGGTTCTATGTGACTCAGACATGAACTCTCTTCAAGACACATGGAATGCAGTTCTGGAATGTGTTTCTCGCCTCGAATTTATAACGTCATCTCCTTCAATTTCTGCCACTGTTATGCATGGGTCAAACCAAATCTCCAAGGATGGTGTTGTTCAATCTCTGAAAGAATTAGCTGCGAAACCTGCGGAACAAATTTTCATGAATAGTGTTAAACTACCTAGCGATTCAGTTGTGGAATTCTTCACTGCTCTCTGTGGTGTATCAGCTGAAGAGCTAAAACAAACTCCAGCTCGTGTCTTCAGCTTGCAGAAGCTTGTTGAAATTAGTTATTACAATATGGCTCGTATACGAATGGTCTGGGCTAGAATCTGGTCTGTCCTAGCAAATCACTTTATATCAGCAGGGAGTCATCATGATGAGAAAATTGCTATGTATGCCATAGATTCTCTAAGACAACTTAGTATGAAGTATTTGGAGCGTGCTGAACTGGCCAATTTCTCTTTCCAAAATGATATTCTTAAACCATTTGTTGTTCTTATGCGGAATAGTCAAAGTGAATCCAAAAGGAGGCTAATTGTTGACTGCATTGTCCAGATGATAAAATGTAAGGTTGGAAGCATAAAGTCTGGGTGGCGTAGTGTATTTATGATTTTTACAGCTTCTGCAGATGATGAAATGGAATCAATTGTTGATAGTGCATTTGAAAATGTTGAGCAGGTCATCTTAGAACACTTTGATCAAGTAGTGGGAGACTGTTTCATGGATTGCGTGAATTGTCTGATCAGGTTTGCCAACAATAAAACTTCGCATCGTATTAGCTTGAAGGCTATTGCACTCCTGCGGATCTGTGAGGACCGTCTTGCAGAGGGTCTTATTCCTGGAGGTGCTTTAATGCCTATTGATGCTACTTTGGATGCAACTTTCGATGTAACTGAGCATTATTGGTTCCCAATGCTGGCTGGTTTATCTGATCTAACATCAGATCAAAGGCCAGAGGTCAGAAGTTGTGCACTTGAAGTCTTGTTTGATTTACTGAATGAAAGAGGTAGCAAGTTCTCCACAGCATTTTGGGAGAGTATTTTTCATCGAGTTCTATTTCCAATTTTTGATCATGTGAGACATGCTGGGAAAGAGGGCTTTGTTTCTCCTGATGATGATTGGTTTCGTGAAACAAGCATACATTCGCTTCAGCTGCTATGCAACCTTTTCAACACATTCTATAAGGAGGTTTGTTTTATGTTGCCTCCACTACTGGGTCTGCTGTTAGATTGTGCCAAAAAGACAGATCAAACAGTGGTCTCAATATCTCTTGGTGCTTTGGTGCATCTCATTGAAGTTGGTGGACATCAATTCAGTGAAAATGACTGGGATACGTTGCTTAAAAGCATAAGAGATGCTTCATACACTACACAACCTCTAGAGCTGCTTAATGTGTTAAGTTTTGAAAATCTGAGGAACCATGGAAGCATTATTAGTGATTCTGAAGGCAACACAGGTGACAGTGGGACCACGAGGTCTATTGACAATGAGGTAATTGGTGACCATCAACTTGATGTCAATAGTAATGAGAAATTGTCCCCACTGGCATCCTCAAATACAAATGCTGATGGAGTGGAAGATTCTGTATCACAGACAATTGTAGATCAGTCTGAAGGCCTTCCATCTCCATCAGGAAGAACTCCCAAAGCTGCAGATGGAGGAGGTTTCCAGCGGAGCCAAACCTTAGGTCAACGGATTATGGGAAATATGGAAAATCTCTTCCTTCGAAATCTTACAAAATCTAAAAGCCATATATCTGATGCTTCTCAACCATCTTCTCCAGTTAAGGCTGCTGATGCTGTAGAGCTTGATACCAAGAATGAGGAGAGTCCTTTGCTGGTAACTGTCAGGGGAAAGTGCATTACACAGTTATTGCTTCTTGGTGCAATTGATGGTATTCAGAAGAAATACTGGACAAAATTAAAAGCACAACAGAAGGTTTCTATAATGGACATTTTGCTGTCTTTGTTGGAGTTTGCTGCTTCATATAACTCGTCCACCAATCTTAGAACTCGTATGCACCAAATTCTTGATGAAAGGCCACCACTAAATCTTCTTCGTCAGGAATTAGCTGGTACTGGCATATATCTGGACATCTTACAAAAAGCAACTTATGGTTTTGAGACAAAAAAAGAAAAAATTCCAGAGTCTGATGGATTTCAAGATGTGGACTCTACAGAAGTTAATGACTTGAGTATTACTCAAGATTCTGATGCAGAAGTGAAATTTGAAAGGTTAGCTGAGGACAAACTGGTGTCTTTCTGTGAACAGGTGCTCAGGGAGGCATCTGACCTCCAGTCAATTACTGGAGAAACCACTAACATGGATATTCATCGTGTCTTGGAACTTCGTGCTCCCATCATTGTTAAGGTGCTTCAAAGCATGTGTTTTATGAACAATAAGATTTTCAGAAGACACCTAAGAGAATTCTACCCATTGCTAACAAAACTTGTTTGCTGTGACCAGATGGATGTTCGGGGAGCTCTTGGTGATTTATTCCAAGCACAACTGAAACCTCTTTTACCATAA
>Glyma17g04890.1 sequence type=predicted peptide gene model=Glyma17g04890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGGAAGGFVTRAFDSILKECSSAKKFPELEKAIQNYTDITKELSQKKQSEVNQAAPSAESGSMNETEGGVATRTEADQSQKAEHASDDRAKIGNINVVLASAGNTLEGADAELILNPLRLAFETKNLKILESALDCLHKLIAYDHLEGDPGLEGGKNVPLFTDILNMVCSCVDNSSPDSTILQVLKVLLTAVASTKFRVHGEPLLGVIRVCYNIALNSKSPINQATSKAMLTQMISITFRRMETDPVEASSGSGGHAISKAASAENLNTKSDESSMGDSNEKEMTLGDALSQAKDASPTSLEELQNLAGGADIKGLEAVLDKAVHTEDGKKITRGIDLESMSIVQRDALLVFRTLCKMGMKEDNDEVTTKTRILSLELLQGLLEGVSHSFTKNFHFIDSVKAYLSYALLRASVSQSPVIFQYATGIFLVLLLQFRESLKGEIGIFFPLIVLRPLDGLEFPVNQKLSVLRMLEKVCKDPQMLVDIFVNYDCDLEAPNLFERMVTTLSKIAQGTQNTDPNSAAVSQTASIKGSSLQGLVSVLKSLVDWEQSHKELEKLKNNQQEGISAGDSSEIRSREDVTSDFEKAKAHKSTLEAAIAEFNRKPMKGVEYLISNKLVENTPASVAQFFKNTPNLDKATIGDYLGQHEEFPLAVMHAYVDSMKFSGFKFDTAIREFLKGFRLPGEAQKIDRIMEKFAERYCADNPGLFKNADTAYVLAYAVIMLNTDAHNPMVWPKMSKSDFVRMNARDDPDECAPKELLEEIYDSIVKEEIKMKDDTSLIGKSSRQKPEGEEGRLVSILNLALPKRKSSGDAKSESEDIIKKTQAIFRNKGVKRGVFYTAQQIELVRPMVEAVGWPLLATFSVTMEEGENKSRVVLLMEGFKAGIHITFVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLVLCDSDMNSLQDTWNAVLECVSRLEFITSSPSISATVMHGSNQISKDGVVQSLKELAAKPAEQIFMNSVKLPSDSVVEFFTALCGVSAEELKQTPARVFSLQKLVEISYYNMARIRMVWARIWSVLANHFISAGSHHDEKIAMYAIDSLRQLSMKYLERAELANFSFQNDILKPFVVLMRNSQSESKRRLIVDCIVQMIKCKVGSIKSGWRSVFMIFTASADDEMESIVDSAFENVEQVILEHFDQVVGDCFMDCVNCLIRFANNKTSHRISLKAIALLRICEDRLAEGLIPGGALMPIDATLDATFDVTEHYWFPMLAGLSDLTSDQRPEVRSCALEVLFDLLNERGSKFSTAFWESIFHRVLFPIFDHVRHAGKEGFVSPDDDWFRETSIHSLQLLCNLFNTFYKEVCFMLPPLLGLLLDCAKKTDQTVVSISLGALVHLIEVGGHQFSENDWDTLLKSIRDASYTTQPLELLNVLSFENLRNHGSIISDSEGNTGDSGTTRSIDNEVIGDHQLDVNSNEKLSPLASSNTNADGVEDSVSQTIVDQSEGLPSPSGRTPKAADGGGFQRSQTLGQRIMGNMENLFLRNLTKSKSHISDASQPSSPVKAADAVELDTKNEESPLLVTVRGKCITQLLLLGAIDGIQKKYWTKLKAQQKVSIMDILLSLLEFAASYNSSTNLRTRMHQILDERPPLNLLRQELAGTGIYLDILQKATYGFETKKEKIPESDGFQDVDSTEVNDLSITQDSDAEVKFERLAEDKLVSFCEQVLREASDLQSITGETTNMDIHRVLELRAPIIVKVLQSMCFMNNKIFRRHLREFYPLLTKLVCCDQMDVRGALGDLFQAQLKPLLP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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