Glyma17g04840 - SoyBase

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Report for Sequence Feature Glyma17g04840

Feature Type:	gene_model
Chromosome:	Gm17
Start:	3244217
stop:	3246403
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g04840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G04690	AT	Annotation by Michelle Graham. TAIR10: Pyridoxamine 5'-phosphate oxidase family protein \| chr2:1644628-1646035 FORWARD LENGTH=203	SoyBase	E_val: 6.00E-34	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0010181	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FMN binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
PTHR13343	Panther	CREG1 PROTEIN	JGI		ISS
UniRef100_G7L3A7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein CREG1 n=1 Tax=Medicago truncatula RepID=G7L3A7_MEDTR	SoyBase	E_val: 1.00E-40	ISS
UniRef100_I1MS20	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MS20_SOYBN	SoyBase	E_val: 4.00E-51	ISS

Expression Patterns of Glyma17g04840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g04840

Paralog	Evidence	Comments
Glyma13g17650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g04840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g043600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g04840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g04840

Limit To All Plant Sequences

>Glyma17g04840.5   sequence type=transcript   gene model=Glyma17g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGGGATAGATTCTTAATCCAATCTAAGCCTGAGAGGCTGAAGGATAGTAGACAGAGTAAAAAAGAAAAAGATGTTCTTGTTATTGATGTCGATCCCAAAAAAACCTGACCCAGATGATGCTCCTGCCTCAATTTCTGGGGAGTCTTAAATACTATCTCAGCTGATTTGGGTGGAGCTCCCTTTCTTCACTATCCTTCTTTTTCATTTTTTCTGCTCTAAATTTCTATTCCGTATTTCTTTTGTGCTACCTTCTACATTATTGACCATTGGATTTGTTAATCTCAAATACTTACAAGTTATTGTTATGGAAAATTATCTTTATGCAGGAATGTGGTTTCATTTAGTGATGGACTACCTAATGATAAAGCTTCATTCACAGTCAGTGAATTCCCTCTTGGGACCTGTGGCAGGAGAGACCCAATGAACCCTACTTGTTCCAAAATTTCTCTAACCGCAAAGCTGAAATTGGTTGATGAAAAGTCAAAGGAAGCCAAAATTGCTAGAAATGCCTTGTTTTCCAAGCATCCAGAGATGAAGGACTGGCCTGAGGATCACCACTTTCAAGTCTTCAAATTAGAAATTGAAAATATATTTCTAATTAATTGGTTTGGTGGTCCAAAACCACTCACAGTGGAACAGTACTTACATCCCAAAATGTGAGTCATTGGTTTGGTGGTCCAAACCCCTTCACTAACATTATAGCTAAGTTCCGACAAAAAAAAAAATTATAGCTAAGCAGGAGATTGTTATTTTGGTCATTGTTGTAACTCATTTTTATATCTAGAGAAGGGTATCGTATTCTTAAATATCCCCTATAAAGTGGTCTATTGATATTTTGGCCATGGAAGTTGGAAGATGCTTTGTATAATATCTCATTATATCTTGAGAAGGCTATGTCGTATTCGTATCCTCAAAAATCCATTATTTTAGACGCTCGCTTCCATCATGAATTCACGTTCCACTATTATAGCCGGGACTTTTATTTTGGTGTCAT

>Glyma17g04840.6   sequence type=transcript   gene model=Glyma17g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGGGATAGATTCTTAATCCAATCTAAGCCTGAGAGGCTGAAGGATAGTAGACAGAGTAAAAAAGAAAAAGATGTTCTTGTTATTGATGTCGATCCCAAAAAAACCTGACCCAGATGATGCTCCTGCCTCAATTTCTGGGGAGTCTTAAATACTATCTCAGCTGATTTGGGAATGTGGTTTCATTTAGTGATGGACTACCTAATGATAAAGCTTCATTCACAGTCAGTGAATTCCCTCTTGGGACCTGTGGCAGGAGAGACCCAATGAACCCTACTTGTTCCAAAATTTCTCTAACCGCAAAGCTGAAATTGGTTGATGAAAAGTCAAAGGAAGCCAAAATTGCTAGAAATGCCTTGTTTTCCAAGCATCCAGAGATGAAGGACTGGCCTGAGGATCACCACTTTCAAGTCTTCAAATTAGAAATTGAAAATATATTTCTAATTAATTGGTTTGGTGGTCCAAAACCACTCACAGTGGAACAGTACTTACATCCCAAAATGTGAGTCATTGGTTTGGTGGTCCAAACCCCTTCACTAACATTATAGCTAAGTTCCGACAAAAAAAAAAATTATAGCTAAGCAGGAGATTGTTATTTTGGTCATTGTTGTAACTCATTTTTATATCTAGAGAAGGGTATCGTATTCTTAAATATCCCCTATAAAGTGGTCTATTGATATTTTGGCCATGGAAGTTGGAAGATGCTTTGTATAATATCTCATTATATCTTGAGAAGGCTATGTCGTATTCGTATCCTCAAAAATCCATTATTTTAGACGCTCGCTTCCATCATGAATTCACGTTCCACTATTATAGCCGGGACTTTTATTTTGGTGTCAT

>Glyma17g04840.7   sequence type=transcript   gene model=Glyma17g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGGGATAGATTCTTAATCCAATCTAAGCCTGAGAGGCTGAAGGATAGTAGACAGAGTAAAAAAGAAAAAGATGTTCTTGTTATTGATGTCGATCCCAAAAAAACCTGACCCAGATGATGCTCCTGCCTCAATTTCTGGGGAGTCTTAAAGAATGTGGTTTCATTTAGTGATGGACTACCTAATGATAAAGCTTCATTCACAGTCAGTGAATTCCCTCTTGGGACCTGTGGCAGGAGAGACCCAATGAACCCTACTTGTTCCAAAATTTCTCTAACCGCAAAGCTGAAATTGGTTGATGAAAAGTCAAAGGAAGCCAAAATTGCTAGAAATGCCTTGTTTTCCAAGCATCCAGAGATGAAGGACTGGCCTGAGGATCACCACTTTCAAGTCTTCAAATTAGAAATTGAAAATATATTTCTAATTAATTGGTTTGGTGGTCCAAAACCACTCACAGTGGAACAGTACTTACATCCCAAAATGTGAGTCATTGGTTTGGTGGTCCAAACCCCTTCACTAACATTATAGCTAAGTTCCGACAAAAAAAAAAATTATAGCTAAGCAGGAGATTGTTATTTTGGTCATTGTTGTAACTCATTTTTATATCTAGAGAAGGGTATCGTATTCTTAAATATCCCCTATAAAGTGGTCTATTGATATTTTGGCCATGGAAGTTGGAAGATGCTTTGTATAATATCTCATTATATCTTGAGAAGGCTATGTCGTATTCGTATCCTCAAAAATCCATTATTTTAGACGCTCGCTTCCATCATGAATTCACGTTCCACTATTATAGCCGGGACTTTTATTTTGGTGTCAT

Coding sequences of Glyma17g04840

Limit To All Plant Sequences

>Glyma17g04840.4   sequence type=CDS   gene model=Glyma17g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCCTACTTGTTCCAAAATTTCTCTAACCGCAAAGCTGAAATTGGTTGATGAAAAGTCAAAGGAAGCCAAAATTGCTAGAAATGCCTTGTTTTCCAAGCATCCAGAGATGAAGGACTGGCCTGAGGATCACCACTTTCAAGTCTTCAAATTAGAAATTGAAAATATATTTCTAATTAATTGGTTTGGTGGTCCAAAACCACTCACAGTGGAACAGTACTTACATCCCAAAATGTGA

>Glyma17g04840.5   sequence type=CDS   gene model=Glyma17g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCCTACTTGTTCCAAAATTTCTCTAACCGCAAAGCTGAAATTGGTTGATGAAAAGTCAAAGGAAGCCAAAATTGCTAGAAATGCCTTGTTTTCCAAGCATCCAGAGATGAAGGACTGGCCTGAGGATCACCACTTTCAAGTCTTCAAATTAGAAATTGAAAATATATTTCTAATTAATTGGTTTGGTGGTCCAAAACCACTCACAGTGGAACAGTACTTACATCCCAAAATGTGA

>Glyma17g04840.6   sequence type=CDS   gene model=Glyma17g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCCTACTTGTTCCAAAATTTCTCTAACCGCAAAGCTGAAATTGGTTGATGAAAAGTCAAAGGAAGCCAAAATTGCTAGAAATGCCTTGTTTTCCAAGCATCCAGAGATGAAGGACTGGCCTGAGGATCACCACTTTCAAGTCTTCAAATTAGAAATTGAAAATATATTTCTAATTAATTGGTTTGGTGGTCCAAAACCACTCACAGTGGAACAGTACTTACATCCCAAAATGTGA

>Glyma17g04840.7   sequence type=CDS   gene model=Glyma17g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCCTACTTGTTCCAAAATTTCTCTAACCGCAAAGCTGAAATTGGTTGATGAAAAGTCAAAGGAAGCCAAAATTGCTAGAAATGCCTTGTTTTCCAAGCATCCAGAGATGAAGGACTGGCCTGAGGATCACCACTTTCAAGTCTTCAAATTAGAAATTGAAAATATATTTCTAATTAATTGGTTTGGTGGTCCAAAACCACTCACAGTGGAACAGTACTTACATCCCAAAATGTGA

Predicted protein sequences of Glyma17g04840

Limit To All Plant Sequences

>Glyma17g04840.4   sequence type=predicted peptide   gene model=Glyma17g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPTCSKISLTAKLKLVDEKSKEAKIARNALFSKHPEMKDWPEDHHFQVFKLEIENIFLINWFGGPKPLTVEQYLHPKM*

>Glyma17g04840.5   sequence type=predicted peptide   gene model=Glyma17g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPTCSKISLTAKLKLVDEKSKEAKIARNALFSKHPEMKDWPEDHHFQVFKLEIENIFLINWFGGPKPLTVEQYLHPKM*

>Glyma17g04840.6   sequence type=predicted peptide   gene model=Glyma17g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPTCSKISLTAKLKLVDEKSKEAKIARNALFSKHPEMKDWPEDHHFQVFKLEIENIFLINWFGGPKPLTVEQYLHPKM*

>Glyma17g04840.7   sequence type=predicted peptide   gene model=Glyma17g04840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPTCSKISLTAKLKLVDEKSKEAKIARNALFSKHPEMKDWPEDHHFQVFKLEIENIFLINWFGGPKPLTVEQYLHPKM*

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