Glyma17g04830 - SoyBase

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Report for Sequence Feature Glyma17g04830

Feature Type:	gene_model
Chromosome:	Gm17
Start:	3240942
stop:	3243552
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g04830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G43520	AT	Annotation by Michelle Graham. TAIR10: Transmembrane proteins 14C \| chr3:15406088-15407699 FORWARD LENGTH=240	SoyBase	E_val: 2.00E-44	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
KOG4267	KOG	Predicted membrane protein	JGI		ISS
PTHR12668	Panther	TRANSMEMBRANE PROTEIN 14, 15	JGI		ISS
PF03647	PFAM	Transmembrane proteins 14C	JGI		ISS
UniRef100_B9RR06	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein 14, putative n=1 Tax=Ricinus communis RepID=B9RR06_RICCO	SoyBase	E_val: 5.00E-53	ISS
UniRef100_I1MS15	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MS15_SOYBN	SoyBase	E_val: 4.00E-152	ISS

Expression Patterns of Glyma17g04830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g04830

Paralog	Evidence	Comments
Glyma13g17660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g04830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g043500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g04830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g04830

Limit To All Plant Sequences

>Glyma17g04830.2   sequence type=transcript   gene model=Glyma17g04830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAATTACTAATTAAGAAAGTGTGAGAGAATGAATTGTTGAAAGAAATCGAAAGAAGGGAGGAGAAGGGTGTCAATGGCAGAGTGTTTGGGTGTTTCAGTTTCAACTCTTGGCTCATTCTCTCTTAGTAGGCCCACAATCTTTTATCGATCTCCCATTAATATCTCTCTCTTTGCCTCTCAATCTCATTTCCCTGCTGCTGCATTTGGTTATTTGACACCTTCCAACCCACACCTGTACGCCGCTGTCTCCTCCGACTCCAAGGCCGCTACTTCGCTAGACCTAACTCAACCCGATCTCGATAATAGCGGCGGCGGTGCTAACGGAAACGCTAACGGCGGCGGCGGTGGTGGAGGAGGCGGAGGAGGTGATGATAGCAAGGGCGAGGAAGGATCGGACGGTGACAAGAGGAAAATGGCTCTGTTGATGTCTCAGAAATTCACTCTAGCTTATGCTGCACTCGTCGGAGTGGGTGGTGTAATGGGTTATCTAAAGAGTGGCAGCAACAAGTCACTTTTGGCTGGGGGTTTGTCTGCATCACTGCTGTATTTTGTTTATACTGAGCTACCAGGAAGGCCTGTTTTTGCTTCATCTGTTGGCCTTGGTAAGTGAATAGTTTGTCAGCATATCTGACTGACTTATTGGTTAAACGTAAAAGCCCATCTTAGGAAACTGCTTCTCATCTGATAATAGAAAGGATGCATTTCTTTTTGTGCTTTATTTTCATAATG

Coding sequences of Glyma17g04830

Limit To All Plant Sequences

>Glyma17g04830.1   sequence type=CDS   gene model=Glyma17g04830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGTGTTTGGGTGTTTCAGTTTCAACTCTTGGCTCATTCTCTCTTAGTAGGCCCACAATCTTTTATCGATCTCCCATTAATATCTCTCTCTTTGCCTCTCAATCTCATTTCCCTGCTGCTGCATTTGGTTATTTGACACCTTCCAACCCACACCTGTACGCCGCTGTCTCCTCCGACTCCAAGGCCGCTACTTCGCTAGACCTAACTCAACCCGATCTCGATAATAGCGGCGGCGGTGCTAACGGAAACGCTAACGGCGGCGGCGGTGGTGGAGGAGGCGGAGGAGGTGATGATAGCAAGGGCGAGGAAGGATCGGACGGTGACAAGAGGAAAATGGCTCTGTTGATGTCTCAGAAATTCACTCTAGCTTATGCTGCACTCGTCGGAGTGGGTGGTGTAATGGGTTATCTAAAGAGTGGCAGCAACAAGTCACTTTTGGCTGGGGGTTTGTCTGCATCACTGCTGTATTTTGTTTATACTGAGCTACCAGGAAGGCCTGTTTTTGCTTCATCTGTTGGCCTTGGCATATCTGCTGCACTTCTTGGGGTGATGGGTTCTCGTTTCAAGAAATCCGGGAAGGTCTTTCCAGCAGGTGTTGTGTCACTTGTGTCCCTCATAATGACTGGTGGTTACTTGCATGGAATTATGCGTAGTGCGCACTAA

>Glyma17g04830.2   sequence type=CDS   gene model=Glyma17g04830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGTGTTTGGGTGTTTCAGTTTCAACTCTTGGCTCATTCTCTCTTAGTAGGCCCACAATCTTTTATCGATCTCCCATTAATATCTCTCTCTTTGCCTCTCAATCTCATTTCCCTGCTGCTGCATTTGGTTATTTGACACCTTCCAACCCACACCTGTACGCCGCTGTCTCCTCCGACTCCAAGGCCGCTACTTCGCTAGACCTAACTCAACCCGATCTCGATAATAGCGGCGGCGGTGCTAACGGAAACGCTAACGGCGGCGGCGGTGGTGGAGGAGGCGGAGGAGGTGATGATAGCAAGGGCGAGGAAGGATCGGACGGTGACAAGAGGAAAATGGCTCTGTTGATGTCTCAGAAATTCACTCTAGCTTATGCTGCACTCGTCGGAGTGGGTGGTGTAATGGGTTATCTAAAGAGTGGCAGCAACAAGTCACTTTTGGCTGGGGGTTTGTCTGCATCACTGCTGTATTTTGTTTATACTGAGCTACCAGGAAGGCCTGTTTTTGCTTCATCTGTTGGCCTTGGTAAGTGA

Predicted protein sequences of Glyma17g04830

Limit To All Plant Sequences

>Glyma17g04830.1   sequence type=predicted peptide   gene model=Glyma17g04830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAECLGVSVSTLGSFSLSRPTIFYRSPINISLFASQSHFPAAAFGYLTPSNPHLYAAVSSDSKAATSLDLTQPDLDNSGGGANGNANGGGGGGGGGGGDDSKGEEGSDGDKRKMALLMSQKFTLAYAALVGVGGVMGYLKSGSNKSLLAGGLSASLLYFVYTELPGRPVFASSVGLGISAALLGVMGSRFKKSGKVFPAGVVSLVSLIMTGGYLHGIMRSAH*

>Glyma17g04830.2   sequence type=predicted peptide   gene model=Glyma17g04830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAECLGVSVSTLGSFSLSRPTIFYRSPINISLFASQSHFPAAAFGYLTPSNPHLYAAVSSDSKAATSLDLTQPDLDNSGGGANGNANGGGGGGGGGGGDDSKGEEGSDGDKRKMALLMSQKFTLAYAALVGVGGVMGYLKSGSNKSLLAGGLSASLLYFVYTELPGRPVFASSVGLGK*

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