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Report for Sequence Feature Glyma17g04800

Feature Type:gene_model
Chromosome:Gm17
Start:3219600
stop:3223735
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g04800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G11910AT Annotation by Michelle Graham. TAIR10: aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506 SoyBaseE_val: 0ISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0048513GO-bp Annotation by Michelle Graham. GO Biological Process: organ development SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0004175GO-mf Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity SoyBaseN/AISS
GO:0004190GO-mf Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity SoyBaseN/AISS
KOG1339 KOG Aspartyl protease JGI ISS
PTHR13683Panther ASPARTYL PROTEASES JGI ISS
PTHR13683:SF85Panther gb def: cg10104-pa [drosophila melanogaster] JGI ISS
PF00026PFAM Eukaryotic aspartyl protease JGI ISS
PF03489PFAM Saposin-like type B, region 2 JGI ISS
PF05184PFAM Saposin-like type B, region 1 JGI ISS
UniRef100_G7IQG4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Aspartic proteinase n=1 Tax=Medicago truncatula RepID=G7IQG4_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233DF8DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DF8D related cluster n=1 Tax=unknown RepID=UPI000233DF8D SoyBaseE_val: 0ISS

Expression Patterns of Glyma17g04800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g04800
ParalogEvidenceComments
Glyma13g17710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g04800 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g043200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g04800
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g04800
>Glyma17g04800.1   sequence type=CDS   gene model=Glyma17g04800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTCAAGTATTTGCTGGTTGTGACGTGTGTGTGTGCTTGGTTTGGATCCTTGGTTGTTACAACTTCTTCTGGTGATGGGTTAATGAGGGTTAGTCTAAAAAGGAGGAGTTTAGATATTAGCAGTCTTAATTCTGCAAAGATCAAGGAGGTTGTTAATCATTTAAAAGCAGATGGAGTGTATCTGAAGAATTATCTTGATGCACAGTATTTTGGCGAAATTGGTATTGGGTCACCTCCACAAAGCTTCAGAGTTGTGTTTGATACTGGAAGCTCGAACCTGTGGGTCCCTTCTGCCAAATGTGTCTTGTCTATTGCTTGCTATTTCCATTCCAAGTATAGATCGAAGCTATCTAACACCTATACGAAAATAGGAACACCTTGCAAGATCCCTTATGGCCGTGGGCACATTCCTGGCTTCATCAGCCAAGATAATATAAGAGTTGGGGACATCATCATCAAAGATCAACAATTTGCTGAGATTACAAAGGAAGGACCGCTGGCGTTTTTAGCAATGCATTTTGATGGGATACTTGGACTTGGATTCCAGAATAAGTCAGTGGGACAAGTCACACCAGTGTGGTACAATATGATAGAACAAGGGCACGTGAGTCAAAAGATTTTCTCCCTTTGGCTAAACCAAGACCCTGTGGCAAAGGTAGGGGGTGAGATTGTCTTTGGTGGCATTGACTGGAGGCACTTTAAGGGTGACCACACTTATGTTCCACTTACTCAAAAGGATTATTGGCAGATTGAGGTGGGAGATATTCTAATTGCAAACAATCCAACAGGGCTATGTGAGGGTGGCTGTGCTGCTATTATTGACTCAGGGACCTCTTTGATTGCCGGTCCAACAAAAATTGTGACTCAAATTAACCGTGCCATTGGAGCAGAAGGATATGTGAGTTATGAATGTAAAAACATCATCCATAACTACGGTGATTCAATATGGGAATATATAATTTCTGGGTTAAAGCCTGAAATTATTTGTGTTGACATTGGACTCTGCTCGCGTAATAGAACATTTATAACAAATGATGTTATTGAAACAGCTACACATAATGAAAGTTGGGGCGAGTCACGAACAAAGGAGAGCCCCTTGTGTACTTTTTGTGACATGATTGTCTTTTGGATGCAAGTTCAGCTTAAGCAAAAGAATACAAAGGAAAAAATATTAAAATATGTGGATGAGCTGTGTGAGAAGCTTCCCAATCCCGTGGGACAAACATTTATAGACTGCAATGATATTGCAAACATGCCACAAATTACATTCACCATTGGAAACAAATCATTTCCTCTCTCTCCAGAACAGTATATGCTAAGAATTGAAGAAGGTTGCAACACTGTCTGCTATGGTGGTTTTGTTCCTCTAGATGTGCCAGCTCCACAAGGTCCCCTCTGGGTTCTTGGAGATCTTTTCTTGGGGGCTTATCACACAGTGTTTGATTATGGCAATCTCCGTATTGGATTTGCTGAAGCTGCGTAG
Predicted protein sequences of Glyma17g04800
>Glyma17g04800.1   sequence type=predicted peptide   gene model=Glyma17g04800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFKYLLVVTCVCAWFGSLVVTTSSGDGLMRVSLKRRSLDISSLNSAKIKEVVNHLKADGVYLKNYLDAQYFGEIGIGSPPQSFRVVFDTGSSNLWVPSAKCVLSIACYFHSKYRSKLSNTYTKIGTPCKIPYGRGHIPGFISQDNIRVGDIIIKDQQFAEITKEGPLAFLAMHFDGILGLGFQNKSVGQVTPVWYNMIEQGHVSQKIFSLWLNQDPVAKVGGEIVFGGIDWRHFKGDHTYVPLTQKDYWQIEVGDILIANNPTGLCEGGCAAIIDSGTSLIAGPTKIVTQINRAIGAEGYVSYECKNIIHNYGDSIWEYIISGLKPEIICVDIGLCSRNRTFITNDVIETATHNESWGESRTKESPLCTFCDMIVFWMQVQLKQKNTKEKILKYVDELCEKLPNPVGQTFIDCNDIANMPQITFTIGNKSFPLSPEQYMLRIEEGCNTVCYGGFVPLDVPAPQGPLWVLGDLFLGAYHTVFDYGNLRIGFAEAA*






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