Glyma17g04770 - SoyBase

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Report for Sequence Feature Glyma17g04770

Feature Type:	gene_model
Chromosome:	Gm17
Start:	3200399
stop:	3206321
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g04770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G26670	AT	Annotation by Michelle Graham. TAIR10: Pectinacetylesterase family protein \| chr5:9318456-9320816 FORWARD LENGTH=416	SoyBase	E_val: 0	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
KOG4287	KOG	Pectin acetylesterase and similar proteins	JGI		ISS
PTHR21562	Panther	NOTUM-RELATED	JGI		ISS
PTHR21562:SF1	Panther	PECTIN ACETYLESTERASE	JGI		ISS
PF03283	PFAM	Pectinacetylesterase	JGI		ISS
UniRef100_G7JR41	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pectin acetylesterase n=1 Tax=Medicago truncatula RepID=G7JR41_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MS08	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MS08_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g04770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g04770

Paralog	Evidence	Comments
Glyma13g17740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g04770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g042900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g04770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g04770

Limit To All Plant Sequences

>Glyma17g04770.1   sequence type=CDS   gene model=Glyma17g04770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCCAAAGAAGCATGAGTGGTGGTGGCATGAAGCTGCTGAGGATGTTTGTGTTTGTGGGGTTGGTGATTGTGAAATGGGTGGAAGGCTTTGAGGATGCTAATGTGACAGACCTAGGCATGCAATATGTCAGTGGAAGAGGTTTCTACAGACCTTTGATGGTTGGTTTTACTCATATTAATGGTGCTGCTGCTAAAGGAGCTGTCTGCCTGGATGGATCTTTACCGGGGTACCACTTCCACCGTGGATATGGTTCAGGATCAAACAGTTGGCTCATACAATTGGAGGGAGGAGGCTGGTGTGGAACTGTAAAAAATTGTCTTTATAGTAAGAAAACACGTCATGGTTCATCATTTTTTATGGAAAAACAAATACCATTTATTGGGATATTGAGCAACAAAGCTGAGGAAAATCCAGATTTTTTCAGTTGGAATAGAATAAAAATCCGTTATTGTGACGGTGCATCATTTAGTGGGGACAGTCAAAATGCGGGAGCAGGGTTGTATTTCAGAGGGCAGCGCATTTGGCAAGCTGCTATGGAAGATTTAATGTCAAAAGGGATGCGCTATGCCAAACAGGCTCTTCTATCTGGTTGTTCTGCGGGAGGTTTAGCTACTATTATACATTGTGATGAATTTCGGGAATTGTTTCCTAGAACCACAAGAGTAAAATGCTTAAGTGATGCTGGATTATTCCTTGATTCTGTTGATGTTTCTGGTCGTCGCAGCTTAAGGAATTTGTTCGGAGGTGTGGTTACCTTGCAGGGAGTGCAAAGAAGTCTTCCAAGGAGTTGTACTAGTCGCCTCAATCCAATTTTGTGCTATTTTCCTCAGCACTTAATTGCTGGTGTCAGGACACCACTGTTTCTTCTCAATGCAGCTTATGATACTTGGCAGATTCAAGCGAGTCTTGCTCCACCATCTGCTGACTACCACTGGAACTGGTATGAATGCAGAAAAAATTATGCACGTTGCAGTGCACCACAGATACAGTATCTTCAAGGTTTCCGAAATCAGATGCTTAGATCTACAAGAGCCTTCTCACGGTCTTTTAAAAACGGGTTGTTCATAAATTCTTGTTTCGCCCATTGCCAATCAGAAAGACAGGATACATGGTTTGCTCGTGATTCCCCTCATATTGGAAATAGAGGGATTGCGGAGTCTGTTGGGAACTGGTATTTTGATCGAGTTAGTGTCCAGGCCATTGGCTGCCCTTACCCTTGTGACAAAACATGCCATAATTTGGTATTTAAGAGATAG

Predicted protein sequences of Glyma17g04770

Limit To All Plant Sequences

>Glyma17g04770.1   sequence type=predicted peptide   gene model=Glyma17g04770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCQRSMSGGGMKLLRMFVFVGLVIVKWVEGFEDANVTDLGMQYVSGRGFYRPLMVGFTHINGAAAKGAVCLDGSLPGYHFHRGYGSGSNSWLIQLEGGGWCGTVKNCLYSKKTRHGSSFFMEKQIPFIGILSNKAEENPDFFSWNRIKIRYCDGASFSGDSQNAGAGLYFRGQRIWQAAMEDLMSKGMRYAKQALLSGCSAGGLATIIHCDEFRELFPRTTRVKCLSDAGLFLDSVDVSGRRSLRNLFGGVVTLQGVQRSLPRSCTSRLNPILCYFPQHLIAGVRTPLFLLNAAYDTWQIQASLAPPSADYHWNWYECRKNYARCSAPQIQYLQGFRNQMLRSTRAFSRSFKNGLFINSCFAHCQSERQDTWFARDSPHIGNRGIAESVGNWYFDRVSVQAIGCPYPCDKTCHNLVFKR*

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