Report for Sequence Feature Glyma17g04710
Feature Type: gene_model
Chromosome: Gm17
Start: 3142418
stop: 3147382
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g04710
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G04450 AT
Annotation by Michelle Graham. TAIR10: WRKY family transcription factor | chr4:2218379-2221113 FORWARD LENGTH=528
SoyBase E_val: 4.00E-59 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0045892 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
PF03106 PFAM
WRKY DNA -binding domain
JGI ISS
UniRef100_G7IQG1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor n=1 Tax=Medicago truncatula RepID=G7IQG1_MEDTR
SoyBase E_val: 5.00E-78 ISS
UniRef100_UPI0001BA58AD UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0001BA58AD related cluster n=1 Tax=unknown RepID=UPI0001BA58AD
SoyBase E_val: 0 ISS
Proteins Associated with Glyma17g04710
Locus Gene Symbol Protein Name
WRKY161 WRKY Transcription Factor
Expression Patterns of Glyma17g04710
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g04710
Paralog Evidence Comments
Glyma13g17800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g04710 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g042300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g04710
Coding sequences of Glyma17g04710
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g04710.1 sequence type=CDS gene model=Glyma17g04710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGGCAAAGTTGCATTGAAAAAATTGCTGGAAGTTCAGAAAAAGGCACATGTTAATAGTACAGATGCACTCAACTGGACTGAGGAACCGTCCATTAAAAATACTCTAGGATCTACTCTTCTCAGTTTGAGTCTGAATAACTTGGAGCCTCCACAAAATCATGAGCAACAGCACCTGAACCAATTGGGCTTGCTGCAAATTGAGCTAGAGGAAGTGAAGAAGGAGAATCAGAATTTAAGGTCCATGCTAAATAAGATCTCTGAACACTACGCTGCTCTTCAGAATCAGTTATTGTCGGCGATGCAGCAGAAGAAACTATCTTCATCACCTCGAAATAATGAGGACATGCAGAGGGACAGCAGGCAAGAAGACATGGAGAAACCAGTGTTATCCTCCTGCAGCCAGTTCTTAAATACTGAAGGTAAATTCAATAAACAAGTAACAACATCACAAGAAGCAAAAACCATAGAAGAGCAAGCATTTGAGGCTTCTTGCAAGAAAGCTAGAGTGTCCGTAAGAGCACGATCAGAATCATCTTTGATGGGTGATGGGTGCCAATGGAGAAAATATGGACAAAAGATATCAAAGGGCAATCCTTGCCCTCGGGCCTACTATCGCTGCAACATGGGAACAGCTTGTCCGGTTCGCAAGCAGGTTCAAAGGTGTTCTGAGGATGAGAGTGTTGTCATCACAACCTATGAGGGGAATCATAATCATTCACTCCCACCAGCAGCCAAGTCCATGGCAAGCACAACATCAGCAGCACTGAAAATGTTCCTTTCCGGCTCAACCTCTAGTTCACACGGAAGCACTTATTCTTATTCAAATTCAGACCTCTTCTCTCCACTATTCACCTCTACCTACTATCCATCTGCATCATCATCATGTCCAACTATAAATTTGGACTTTACCCAAACCTCTAAGGACAACCTGAAATTTCCAAGTGTTATTTCTTCAAACCATTTGCAACCTTTTCCTCTTTCATTGCATGGTCAACCTCAACAATCTGAGGGAATATTACCCTCAGAGAAAAACCTTGCCTTGGTGGATGTTGTCAGTGCTGCCATAACCAATGATCCTTCTCTTAAGGCAGCATTAGAAGCAGCTGTTTCCTCAATCATTGGAGACTCTCAGAACATCAATAACCATAGTCAATCACTACCAACTTTCTAA
Predicted protein sequences of Glyma17g04710
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g04710.1 sequence type=predicted peptide gene model=Glyma17g04710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEGKVALKKLLEVQKKAHVNSTDALNWTEEPSIKNTLGSTLLSLSLNNLEPPQNHEQQHLNQLGLLQIELEEVKKENQNLRSMLNKISEHYAALQNQLLSAMQQKKLSSSPRNNEDMQRDSRQEDMEKPVLSSCSQFLNTEGKFNKQVTTSQEAKTIEEQAFEASCKKARVSVRARSESSLMGDGCQWRKYGQKISKGNPCPRAYYRCNMGTACPVRKQVQRCSEDESVVITTYEGNHNHSLPPAAKSMASTTSAALKMFLSGSTSSSHGSTYSYSNSDLFSPLFTSTYYPSASSSCPTINLDFTQTSKDNLKFPSVISSNHLQPFPLSLHGQPQQSEGILPSEKNLALVDVVSAAITNDPSLKAALEAAVSSIIGDSQNINNHSQSLPTF*