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Report for Sequence Feature Glyma17g04680

Feature Type:gene_model
Chromosome:Gm17
Start:3126391
stop:3127356
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma17g04680
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G17180AT Annotation by Michelle Graham. TAIR10: glutathione S-transferase TAU 25 | chr1:5872208-5872958 FORWARD LENGTH=221 SoyBaseE_val: 3.00E-93ISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004364GO-mf Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity SoyBaseN/AISS
KOG0406 KOG Glutathione S-transferase JGI ISS
PTHR11260Panther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING JGI ISS
PTHR11260:SF54Panther SUBFAMILY NOT NAMED JGI ISS
PF00043PFAM Glutathione S-transferase, C-terminal domain JGI ISS
PF02798PFAM Glutathione S-transferase, N-terminal domain JGI ISS
UniRef100_G7JR24UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glutathione S-transferase n=1 Tax=Medicago truncatula RepID=G7JR24_MEDTR SoyBaseE_val: 1.00E-122ISS
UniRef100_I1MRZ9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRZ9_SOYBN SoyBaseE_val: 4.00E-157ISS

Expression Patterns of Glyma17g04680
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g04680 not represented in the dataset
Glyma17g04680 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g04680 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.17g042000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma17g04680
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma17g04680
>Glyma17g04680.1   sequence type=CDS   gene model=Glyma17g04680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATGAGGTTGTGTTGGTGAATTTCAATCTGAGTATGTTCTGCATAAGAGTTAGGATTGCATTGGAAGAGAAAGGGGTCAAGTATGAGATCAAGGAAGAGGATTTGGTGAACACCAAGAGTGCACTGCTTCTGCAAATGAATCCCGTTCACAAGAAAGTCCCTGTCTTTATCCACAATGGCAAACCCATCTCTGAATCCCTCATTATTGTTGAGTATATTGATGAGGTCTGGAAGGATAAGGCACCACTTTTGCCCACTGATCCATACCAGAGAGCTCAAGCCAGGTTCTGGGCTGATTTTGTTAATAACAAAGTGCATGAAGTTGCAAAGAGGATATGGACTGGGAAGGTAGGTGAACATGAGGCAGAAAAGAAGGAGTTAATAGAGAATGTGAAGCAATTGGAGGAGGTGCTTGGCGACAAGCCATATTTTGGGGGTGAGACATTTGGGTTTGTTGATATTGCTTTGATTCCCTTTTATAAATGGTTCTCTAGTTATGAGAAAGTAGGCAATTTCAAGCTGCACTATCCAAAACTCATTGGTTGGGCAAACAGATGTTTGGAGAGAGAGAGCGTGTCCAAATCCGTTTCTGATGAAAAAGATGTCTATGAGTTTGTTCTGATGTACAGGAAACTGATCGGGGTGGACTGA
Predicted protein sequences of Glyma17g04680
>Glyma17g04680.1   sequence type=predicted peptide   gene model=Glyma17g04680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADEVVLVNFNLSMFCIRVRIALEEKGVKYEIKEEDLVNTKSALLLQMNPVHKKVPVFIHNGKPISESLIIVEYIDEVWKDKAPLLPTDPYQRAQARFWADFVNNKVHEVAKRIWTGKVGEHEAEKKELIENVKQLEEVLGDKPYFGGETFGFVDIALIPFYKWFSSYEKVGNFKLHYPKLIGWANRCLERESVSKSVSDEKDVYEFVLMYRKLIGVD*






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