Glyma17g04661 - SoyBase

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Report for Sequence Feature Glyma17g04661

Feature Type:	gene_model
Chromosome:	Gm17
Start:	3107379
stop:	3117305
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g04661

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48310	AT	Annotation by Michelle Graham. TAIR10: chromatin remodeling factor18 \| chr1:17848620-17853731 REVERSE LENGTH=673	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG1000	KOG	Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily	JGI		ISS
PTHR10799	Panther	ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED	JGI		ISS
PTHR10799:SF43	Panther	HELICASE	JGI		ISS
PF00176	PFAM	SNF2 family N-terminal domain	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
UniRef100_B9S022	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chromatin remodelling complex ATPase chain isw-1, putative n=1 Tax=Ricinus communis RepID=B9S022_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F504	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F504 related cluster n=1 Tax=unknown RepID=UPI000233F504	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g04661

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma17g04661 not represented in the dataset	Glyma17g04661 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g04661

Paralog	Evidence	Comments
Glyma13g17850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g04661 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g041700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g04661

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma17g04661

Limit To All Plant Sequences

>Glyma17g04661.2   sequence type=transcript   gene model=Glyma17g04661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCATTGAATTTGAATACTGGTCAGGCAGGGACCCTAGTCAAGAAGGGAAGAAAAATTTTCACGTTTACGAAAGAGAAAAGGAAGGAAAGAAAAAGAGAGCTAGCATTGCATTTGAGAGAGCATCCATGGAAGTGGAGGACGACTGGGATTTGAGCGCAGAGGACCTCGATTCCCTCGAAAGAGACGCTTTCCAGAAAATTGCCCAACTACGCAACCCTACTCCTTCTTCTCCGCATCAACGCCACCATTCTGCAACTGCAACAACCAACCACCTTCCTCCGAAACCCCTTCCCGATTCGCGTCCCCAAACTGCTGGTACTTTGTCTCAAGCAGCAAGAGCATTGCCCACGTCATTCAAATCAGGGACAAACAACGACAAGCAGTCAAAAGAGCTGCCAAAGTTTTCAGTCAAATTTTTTCTTCATTCCAGTGGAAATGTTGCAGCCAAGTTTCAATATGACCAGGTAGTAATTGCTGCTTTTCGAAGAATCCCTAGATCTTCTTGGAATGCAAAGGAACGGTTATGGATATTCCCACTATCTTCATTGTTAGAAGCAGAGAAGGTTCTTGGAGAAATACCTAGTTATAGTGTTCAGGTAGATAACTTAGATCCCTTAGTGAAACGTGCTGTTGCTGCAGCGTCTGCAGTTCCAGATCTTCAAGATCGATACCACAAGATCCCTAGTTATATTGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTACAGCATGGAGGACGTGTTCTCTTAGCAGATGAAATGGGACTTGGGAAAACTTTGCAGGCCATTGCTGTAGCTTCTTGCATACAGGACTTGTGGCCTGTTCTCATAATTGCACCGTCTTCGTTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTATTGTCTTATCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAATATAGTATCTTCAAGTGCCAAAAGCAGCATTCGTCTGGATGGACTATTCAACATTATCTCATATGATTTGGTGCCAAAGCTACAGAATATGCTTATGACACATGACTTTAAGGTTGTGATTGCTGATGAGTCGCATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCTGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCACGACCAATTGAATTATTCAAGCAGTTGGAAGCTTTGTATCCTGATGTATATAGGAACGTTCATGAATATGGTAACCGTTACTGCAAGGGTGGAGTTTTTGGAGTTTATCAAGGTGCAAGTAACCATGAAGAGTTGCACAACTTGATCAAGGCAACAGTGATGATTCGCAGGCTTAAAAAGGATGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTGGAAAACAAGGACATGAAGCAAATTAATGCTCTATTTCAAGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCAGCTAAATCACAAGAGGAGGCTGAATCACTCAAGTTTGCTCAAAAGAATCTTATTAACAAGATATATACTGATTCTGCAGAAGCTAAGATTCCATCTGTTCTTGATTATATCGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGCCAATGATTGATTCAATACATGAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACACCTGCTGCTTCTAGGCAACAATTGGTTACAGACTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTGCAGAATTGTCTTGGACTCCTGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTAGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGTTAGACGGCCATGAGAACGTCTTGGAGGTCTCAGCTAGTCTGCCGGTGAATAGCCCTTCAAAGCAGAAAACTATAGACCAGTATGTTAGAAAATCTGATAACATGGGTAGTTTGGTGAGTAGCCCTTCAAAGCAGAAAACTCTAGACCAGTTTGTTAGAAGATGCGATAATACGGATAGGTTGGAATATGAGCCCAACCCCAAACGTCCCCGAAGCTGACCCTTGAAACGGTGCTCTAGTTGGAGAAGAATAATCGCATATTGGCACTCTTGTCGTACCATGAGAAGAGGGACTTCTAACGCAGGAGGGTGTAGCTTGTCAGCACTGTTTACAACTCTAAACTATGCGCTGATGCCGAAGGAACTTAATGGTTTTGCGGAATATGTATGGGATGAAAATGGTGATGAAGTTTCCCAACAAATTTTAGGTTTCAGGTTTCCTTTTAATATCTTGTCCCCATCAGTTCTTAGTGGGACTTGTACA

Coding sequences of Glyma17g04661

Limit To All Plant Sequences

>Glyma17g04661.1   sequence type=CDS   gene model=Glyma17g04661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCATTGAATTTGAATACTGGTCAGGCAGGGACCCTAGTCAAGAAGGGAAGAAAAATTTTCACGTTTACGAAAGAGAAAAGGAAGGAAAGAAAAAGAGAGCTAGCATTGCATTTGAGAGAGCATCCATGGAAGTGGAGGACGACTGGGATTTGAGCGCAGAGGACCTCGATTCCCTCGAAAGAGACGCTTTCCAGAAAATTGCCCAACTACGCAACCCTACTCCTTCTTCTCCGCATCAACGCCACCATTCTGCAACTGCAACAACCAACCACCTTCCTCCGAAACCCCTTCCCGATTCGCGTCCCCAAACTGCTGGTACTTTGTCTCAAGCAGCAAGAGCATTGCCCACGTCATTCAAATCAGGGACAAACAACGACAAGCAGTCAAAAGAGCTGCCAAAGTTTTCAGTCAAATTTTTTCTTCATTCCAGTGGAAATGTTGCAGCCAAGTTTCAATATGACCAGGTAGTAATTGCTGCTTTTCGAAGAATCCCTAGATCTTCTTGGAATGCAAAGGAACGGTTATGGATATTCCCACTATCTTCATTGTTAGAAGCAGAGAAGGTTCTTGGAGAAATACCTAGTTATAGTGTTCAGGTAGATAACTTAGATCCCTTAGTGAAACGTGCTGTTGCTGCAGCGTCTGCAGTTCCAGATCTTCAAGATCGATACCACAAGATCCCTAGTTATATTGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTACAGCATGGAGGACGTGTTCTCTTAGCAGATGAAATGGGACTTGGGAAAACTTTGCAGGCCATTGCTGTAGCTTCTTGCATACAGGACTTGTGGCCTGTTCTCATAATTGCACCGTCTTCGTTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTATTGTCTTATCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAATATAGTATCTTCAAGTGCCAAAAGCAGCATTCGTCTGGATGGACTATTCAACATTATCTCATATGATTTGGTGCCAAAGCTACAGAATATGCTTATGACACATGACTTTAAGGTTGTGATTGCTGATGAGTCGCATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCTGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCACGACCAATTGAATTATTCAAGCAGTTGGAAGCTTTGTATCCTGATGTATATAGGAACGTTCATGAATATGGTAACCGTTACTGCAAGGGTGGAGTTTTTGGAGTTTATCAAGGTGCAAGTAACCATGAAGAGTTGCACAACTTGATCAAGGCAACAGTGATGATTCGCAGGCTTAAAAAGGATGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTGGAAAACAAGGACATGAAGCAAATTAATGCTCTATTTCAAGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCAGCTAAATCACAAGAGGAGGCTGAATCACTCAAGTTTGCTCAAAAGAATCTTATTAACAAGATATATACTGATTCTGCAGAAGCTAAGATTCCATCTGTTCTTGATTATATCGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGCCAATGATTGATTCAATACATGAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACACCTGCTGCTTCTAGGCAACAATTGGTTACAGACTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTGCAGAATTGTCTTGGACTCCTGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTAGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGTTAGACGGCCATGAGAACGTCTTGGAGGTCTCAGCTAGTCTGCCGGTGAATAGCCCTTCAAAGCAGAAAACTATAGACCAGTATGTTAGAAAATCTGATAACATGGGTAGTTTGGTGAGTAGCCCTTCAAAGCAGAAAACTCTAGACCAGTTTGTTAGAAGATGCGATAATACGGATAGGTTGGAATATGAGCCCAACCCCAAACGTCCCCGAAGCTGA

>Glyma17g04661.2   sequence type=CDS   gene model=Glyma17g04661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCATTGAATTTGAATACTGGTCAGGCAGGGACCCTAGTCAAGAAGGGAAGAAAAATTTTCACGTTTACGAAAGAGAAAAGGAAGGAAAGAAAAAGAGAGCTAGCATTGCATTTGAGAGAGCATCCATGGAAGTGGAGGACGACTGGGATTTGAGCGCAGAGGACCTCGATTCCCTCGAAAGAGACGCTTTCCAGAAAATTGCCCAACTACGCAACCCTACTCCTTCTTCTCCGCATCAACGCCACCATTCTGCAACTGCAACAACCAACCACCTTCCTCCGAAACCCCTTCCCGATTCGCGTCCCCAAACTGCTGGTACTTTGTCTCAAGCAGCAAGAGCATTGCCCACGTCATTCAAATCAGGGACAAACAACGACAAGCAGTCAAAAGAGCTGCCAAAGTTTTCAGTCAAATTTTTTCTTCATTCCAGTGGAAATGTTGCAGCCAAGTTTCAATATGACCAGGTAGTAATTGCTGCTTTTCGAAGAATCCCTAGATCTTCTTGGAATGCAAAGGAACGGTTATGGATATTCCCACTATCTTCATTGTTAGAAGCAGAGAAGGTTCTTGGAGAAATACCTAGTTATAGTGTTCAGGTAGATAACTTAGATCCCTTAGTGAAACGTGCTGTTGCTGCAGCGTCTGCAGTTCCAGATCTTCAAGATCGATACCACAAGATCCCTAGTTATATTGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTACAGCATGGAGGACGTGTTCTCTTAGCAGATGAAATGGGACTTGGGAAAACTTTGCAGGCCATTGCTGTAGCTTCTTGCATACAGGACTTGTGGCCTGTTCTCATAATTGCACCGTCTTCGTTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTATTGTCTTATCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAATATAGTATCTTCAAGTGCCAAAAGCAGCATTCGTCTGGATGGACTATTCAACATTATCTCATATGATTTGGTGCCAAAGCTACAGAATATGCTTATGACACATGACTTTAAGGTTGTGATTGCTGATGAGTCGCATTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCTGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCACGACCAATTGAATTATTCAAGCAGTTGGAAGCTTTGTATCCTGATGTATATAGGAACGTTCATGAATATGGTAACCGTTACTGCAAGGGTGGAGTTTTTGGAGTTTATCAAGGTGCAAGTAACCATGAAGAGTTGCACAACTTGATCAAGGCAACAGTGATGATTCGCAGGCTTAAAAAGGATGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTGGAAAACAAGGACATGAAGCAAATTAATGCTCTATTTCAAGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCAGCTAAATCACAAGAGGAGGCTGAATCACTCAAGTTTGCTCAAAAGAATCTTATTAACAAGATATATACTGATTCTGCAGAAGCTAAGATTCCATCTGTTCTTGATTATATCGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGCCAATGATTGATTCAATACATGAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACACCTGCTGCTTCTAGGCAACAATTGGTTACAGACTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTGCAGAATTGTCTTGGACTCCTGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTAGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGTTAGACGGCCATGAGAACGTCTTGGAGGTCTCAGCTAGTCTGCCGGTGAATAGCCCTTCAAAGCAGAAAACTATAGACCAGTATGTTAGAAAATCTGATAACATGGGTAGTTTGGTGAGTAGCCCTTCAAAGCAGAAAACTCTAGACCAGTTTGTTAGAAGATGCGATAATACGGATAGGTTGGAATATGAGCCCAACCCCAAACGTCCCCGAAGCTGA

Predicted protein sequences of Glyma17g04661

Limit To All Plant Sequences

>Glyma17g04661.1   sequence type=predicted peptide   gene model=Glyma17g04661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIEFEYWSGRDPSQEGKKNFHVYEREKEGKKKRASIAFERASMEVEDDWDLSAEDLDSLERDAFQKIAQLRNPTPSSPHQRHHSATATTNHLPPKPLPDSRPQTAGTLSQAARALPTSFKSGTNNDKQSKELPKFSVKFFLHSSGNVAAKFQYDQVVIAAFRRIPRSSWNAKERLWIFPLSSLLEAEKVLGEIPSYSVQVDNLDPLVKRAVAAASAVPDLQDRYHKIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQDLWPVLIIAPSSLRLQWASMIQQWLNIPSSDILIVLSQSGGSNRGGFNIVSSSAKSSIRLDGLFNIISYDLVPKLQNMLMTHDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGVFGVYQGASNHEELHNLIKATVMIRRLKKDVLSQLPVKRRQQVFLDLENKDMKQINALFQELEMVKAKIKAAKSQEEAESLKFAQKNLINKIYTDSAEAKIPSVLDYIGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGGTPAASRQQLVTDFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENVLEVSASLPVNSPSKQKTIDQYVRKSDNMGSLVSSPSKQKTLDQFVRRCDNTDRLEYEPNPKRPRS*

>Glyma17g04661.2   sequence type=predicted peptide   gene model=Glyma17g04661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGIEFEYWSGRDPSQEGKKNFHVYEREKEGKKKRASIAFERASMEVEDDWDLSAEDLDSLERDAFQKIAQLRNPTPSSPHQRHHSATATTNHLPPKPLPDSRPQTAGTLSQAARALPTSFKSGTNNDKQSKELPKFSVKFFLHSSGNVAAKFQYDQVVIAAFRRIPRSSWNAKERLWIFPLSSLLEAEKVLGEIPSYSVQVDNLDPLVKRAVAAASAVPDLQDRYHKIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQDLWPVLIIAPSSLRLQWASMIQQWLNIPSSDILIVLSQSGGSNRGGFNIVSSSAKSSIRLDGLFNIISYDLVPKLQNMLMTHDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGVFGVYQGASNHEELHNLIKATVMIRRLKKDVLSQLPVKRRQQVFLDLENKDMKQINALFQELEMVKAKIKAAKSQEEAESLKFAQKNLINKIYTDSAEAKIPSVLDYIGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGGTPAASRQQLVTDFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENVLEVSASLPVNSPSKQKTIDQYVRKSDNMGSLVSSPSKQKTLDQFVRRCDNTDRLEYEPNPKRPRS*

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