Glyma17g04650 - SoyBase

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Report for Sequence Feature Glyma17g04650

Feature Type:	gene_model
Chromosome:	Gm17
Start:	3105337
stop:	3107308
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g04650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48300	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 96 Blast hits to 87 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 2; Plants - 65; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). \| chr1:17847391-17848338 FORWARD LENGTH=285	SoyBase	E_val: 1.00E-33	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0019432	GO-bp	Annotation by Michelle Graham. GO Biological Process: triglyceride biosynthetic process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: diacylglycerol O-acyltransferase activity	SoyBase	N/A	ISS
UniRef100_A8VTA4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Diacylglycerol acyltransferase n=1 Tax=Arachis hypogaea RepID=A8VTA4_ARAHY	SoyBase	E_val: 6.00E-57	ISS
UniRef100_I1MRZ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRZ6_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma17g04650

Locus	Gene Symbol	Protein Name
	DGAT3A	diacylglycerol acyltransferase 3 gene A

Expression Patterns of Glyma17g04650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g04650

Paralog	Evidence	Comments
Glyma13g17860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g04650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g041600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g04650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g04650

Limit To All Plant Sequences

>Glyma17g04650.1   sequence type=CDS   gene model=Glyma17g04650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATCTCCGGCACCGTTCTCCGTCAGGTCAGCTACGTCTCCGGCTATGGGACCCACACGCGGTCCCGCGGCCTGGCTCCTCGTTTTGGGGTGAGGATGGGGATGGGTTCTGGTTTCTGTGACGAGGGGCATTTGCGGTATTACCAGGACACCAAAAAGGTTCTCACCCCAAAGAAGAAGTTGAAGCTGCTCAAGGGTTTCTCCAAATTAGGGCTTGCATCGGATCCCGAGAAACTCGCCATGTTCTATGATCTTCAACAAAACCTCACCTCGGATGCTGGAGATGTATTACTGAGAGAGTTAGAAGCAGCAAGAGCAAAGGAGAAGGAAGTGAAGAAGAAAAGGAAACAAGAGAAGAAGGCCAAACTCAAAGCTGCCAAGATGAATTGTGAATCTTCTTCATCTTCATCGTCCGAATCAAGTGACAGCGATTGTGGTTGTGATCAAGTGGTTGACATGAACACCTTCAGAGCTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGTTGCCCCTGCACCTGTCGAGGAATCCCCACTGCCCAAGACCGCCCCCATTGTTGAGGATGCGAATGCGCATTGCGTTGCCATGGAACTGTGTTCTAAGAATGATATATATGTTAGCAGTGCTAGTAATGGTTTTAAGAACGAGAGTGCTGTAGTTACCTCTGCTCCTCAGAAGAGGATTGAGGTATGCATGGGGAACAAGTGCAAAAGATCAGGGGCTGCTGCATTGATGCAAGAGTTTGAGAAAGTGGTGGGTGTTGAAGGTGTAGCTGTTGTTGCATGCAAGTGCATGGGCAAGTGCAAAACTGCTCCTAATGTTAAAGTTCAGAATTCTGTTGATCATAATAGCCTGGCTCAGGGACTTGATGATTCTGTTAAGATTCCTGCTAACCCTCTATGCATTGGGGTTGGCTTGGAGGATGTGGATGCCATCGTGGCTAGATATTTTTGGGAGAGTCACACAGATATAGGCATGGCAGGTGCAGGTGCAGCTACAGCTACTTGA

Predicted protein sequences of Glyma17g04650

Limit To All Plant Sequences

>Glyma17g04650.1   sequence type=predicted peptide   gene model=Glyma17g04650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEISGTVLRQVSYVSGYGTHTRSRGLAPRFGVRMGMGSGFCDEGHLRYYQDTKKVLTPKKKLKLLKGFSKLGLASDPEKLAMFYDLQQNLTSDAGDVLLRELEAARAKEKEVKKKRKQEKKAKLKAAKMNCESSSSSSSESSDSDCGCDQVVDMNTFRAGVGVGVGVGVGVVAPAPVEESPLPKTAPIVEDANAHCVAMELCSKNDIYVSSASNGFKNESAVVTSAPQKRIEVCMGNKCKRSGAAALMQEFEKVVGVEGVAVVACKCMGKCKTAPNVKVQNSVDHNSLAQGLDDSVKIPANPLCIGVGLEDVDAIVARYFWESHTDIGMAGAGAATAT*

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