Report for Sequence Feature Glyma17g04550
Feature Type: gene_model
Chromosome: Gm17
Start: 3023167
stop: 3025442
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma17g04550
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G18340 AT
Annotation by Michelle Graham. TAIR10: late embryogenesis abundant domain-containing protein / LEA domain-containing protein | chr2:7969400-7971025 FORWARD LENGTH=456
SoyBase E_val: 3.00E-17 ISS
GO:0009793 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR23241 Panther
LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED
JGI ISS
PF02987 PFAM
Late embryogenesis abundant protein
JGI ISS
UniRef100_Q39873 UniRef
Annotation by Michelle Graham. Best UniRef hit: Lea protein n=1 Tax=Glycine max RepID=Q39873_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q39873 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Lea protein n=1 Tax=Glycine max RepID=Q39873_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma17g04550
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma17g04550
Paralog Evidence Comments
Glyma13g17980 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma17g04550 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.17g040800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma17g04550
Coding sequences of Glyma17g04550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma17g04550.1 sequence type=CDS gene model=Glyma17g04550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCGAGGGTGGTTTCGGTTTTGGTGATAGCGATGATGTTGTTTGCCATGAACTGTAACTGCACTAGTGTTGGCCACATGCCTTCAACCAAAGAGGAAGGTCACGATTTTCAGGAGGCTAAAGCCAAGACAACACAAACTGCGAACAAGGCCATGGAAACTGGTAAAGATGGGAAAGAAGCCGCAGAGTCATGGACAGAATGGGCTAAAGAGAAACTCACTGAAGGTCTTGGCTTCAAACATGATCAAGAATCCACCACTAAGAAAGTCTCTGACTATGCCGGTGATGCTGCTCAGAAATCAAAGGACTATGCCGGTGACACTGCTCAGAAAACCAAGGACTATGCCGGTGACACTGCTCAGAAAACCAAGGACTATGCCGGTGACACTGCACAGACATCAAAGGACTATGCCGGTGATGCTGCTCAGAAATCAAAGGGCTATGTCGGTGATGCTGCACAAAAGACCAAAGAATATGTTGGTGATGCTGCTCAGAAGACCATGGATTATGCCACTGATGCAGCACAGAAGACCAAAGATTATGCTACTCAGAAGACTAAGGACTATGCAAGTGATGCAACTGATGCTGCAAAAAAGACTAAAGATTATGCTGCTCAGAAGACCAAGGATTATGCAAGTGATGCAACTGATGCTGCAAAAAAGACTAAGGATTATGCTGCGCAGAAGACCAAGGACTATGCCAGTGGTGGTGCGCAGAAGACCAAGGACTATGCCAGTGGTGCTGCGCAGAAGACCAAGGACTATGCAAGTGATGCTGCGCAGAGGACCAAGGACCATGCAAGTGATGGTGCTCAAAAGAGCAAAGAATATGCGGGTGATGTAGCACAGAATGCCAAAGATTATGCTCAAAAGAGCAAAGATTATGCGGGTGATGCTGTACAGAATATCAAAGATTATGCAAATGATGCAGCGCACAAGAGCAAAGATTATGCTGGTGATGCTTCTCACAAGAGCAAAGAAGCTTCTGATTATGCCAGTGAGACGGCTCAGAAGACCAAAGACTATGTTGGTGATGCTGCTCAGAAAAGCAAAGAGGCTTCTGAATATGCTAGTGATGCGGCTCAGAGGACCAAAGAGTATGCTGGTGATGCCACCAAGAGAAGCAAAGAGGCTTCTGATCATGCCAATGACATGGCTCGGAAGACCAAAGACTACGCCAGTGACACTGCTCAGAGAACCAAGGAAAAACTCCAAGACATTGCATCTGAGGCTGGTCAATACAGTACAGAGAAGGCCAGAGAAATGAAGGATGCAGCAGCAGAGAAGGCTAGTGACATTGCAAAGGCTGCAAAGCAAAAATCACAAGAGCTGAAAGACAAATTAGGTGGACAACACCGGGATGCTGAGCTTTGA
Predicted protein sequences of Glyma17g04550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma17g04550.1 sequence type=predicted peptide gene model=Glyma17g04550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASRVVSVLVIAMMLFAMNCNCTSVGHMPSTKEEGHDFQEAKAKTTQTANKAMETGKDGKEAAESWTEWAKEKLTEGLGFKHDQESTTKKVSDYAGDAAQKSKDYAGDTAQKTKDYAGDTAQKTKDYAGDTAQTSKDYAGDAAQKSKGYVGDAAQKTKEYVGDAAQKTMDYATDAAQKTKDYATQKTKDYASDATDAAKKTKDYAAQKTKDYASDATDAAKKTKDYAAQKTKDYASGGAQKTKDYASGAAQKTKDYASDAAQRTKDHASDGAQKSKEYAGDVAQNAKDYAQKSKDYAGDAVQNIKDYANDAAHKSKDYAGDASHKSKEASDYASETAQKTKDYVGDAAQKSKEASEYASDAAQRTKEYAGDATKRSKEASDHANDMARKTKDYASDTAQRTKEKLQDIASEAGQYSTEKAREMKDAAAEKASDIAKAAKQKSQELKDKLGGQHRDAEL*