SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G06483 | AT | Annotation by Michelle Graham. TAIR10: pyruvate dehydrogenase kinase | chr3:1990727-1992581 REVERSE LENGTH=366 | SoyBase | E_val: 0 | ISS |
| GO:0030003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0070838 | GO-bp | Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0004740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyruvate dehydrogenase (acetyl-transferring) kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0009927 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histidine phosphotransfer kinase activity | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| KOG0787 | KOG | Dehydrogenase kinase | JGI | ISS | |
| PTHR11947 | Panther | PYRUVATE DEHYDROGENASE KINASE | JGI | ISS | |
| PTHR11947:SF3 | Panther | PYRUVATE DEHYDROGENASE KINASE | JGI | ISS | |
| PF02518 | PFAM | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | JGI | ISS | |
| PF10436 | PFAM | Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase | JGI | ISS | |
| UniRef100_A0MP01 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial pyruvate dehydrogenase E1alpha-kinase 3 n=1 Tax=Glycine max RepID=A0MP01_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MRY2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRY2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g04470 not represented in the dataset |
Glyma17g04470 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g18021 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g040500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g04470.2 sequence type=transcript gene model=Glyma17g04470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGCGCAGAGTACGGCAAAACGCCAGACAAAAACTGAAACTTAGTCATCAAATCAAAGCCTTGTTTTTCTCAAACCCATCTTTCTTTCCCCACCCCACTTGTCCACTTCTGTCCCTATCTCTCTCCACACTTCTTGGGACACTGTCGTTGTCGTTTTCATCTATGTCACTTCCTAGCTCCCGGTTTCATTTATTATATGTTGTTGATTTGTGTGTTGCTGAATTCAGAAACAAGGCATGGAGGTTAACATTGAGAAAACGTTGCTAATGTGTAAGAGTTTCATGAAAGAGGTAAAGATATGGGGTTGTTTGAAGCAGACAGGGGTCAGCCTGAGATACATGATGGAGTTTGGTTCCAACCCCACTCAGAAGAATTTGCTCATTTCTGCACAGTTCCTTCACAAAGAGCTTCCCATTAGAATTGCAAGGAGAGCCATTGAGCTTCACTCTCTCCCTCATGGCTTGTCTCACATGCCTCCTGTCTTGAAGGTTAGACATTGGTACTTGGATTCTTTCCGTGAAATTATATCTTTCCCTGAGATCAAGAATATGAATGACGAGAAAGAATTCACCGAACTGATTAAGGCCATCAAGGTGAGACACAACAATGTGGTACCTACAATGGCCTTGGGTGTTCAGCAATTGAAGAATGTTTTTGAGGATCCTGATGAGATTGATGAGTTTCTTGATCGCTTTTACATGTCAAGAATTGGAATTCGTATGCTCATCGGGCAGCATGTTGAGTTGCACAATCCGAATCCTCCTCCCAATTGTGTAGGTTATATACATACAAATATGTCTCCTGTGAATGTGGCAAGGAATGCTAGTGAGGATGCACGTTCTATGTGTTATCGCGAATATGGCAGTGCCGCAGAAGTTCGCATTTACGGGGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGGTATTTGAGTTGGTTAAGAACTCGCTGCGTGCTGTCCAAGAGCGTTTTATGGACTCTGACGAAGTTGCTCCTCCCATTAGAATAATAATAGCAGATGGAATAGAGGATGTTACCATAAAGGTAAGTTTCTATAACTTTTAAGCAGAACCTTTTTTGGGGATATCTCCACCCTGTTCTCAGTGTTATTT
>Glyma17g04470.1 sequence type=CDS gene model=Glyma17g04470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGTTAACATTGAGAAAACGTTGCTAATGTGTAAGAGTTTCATGAAAGAGGTAAAGATATGGGGTTGTTTGAAGCAGACAGGGGTCAGCCTGAGATACATGATGGAGTTTGGTTCCAACCCCACTCAGAAGAATTTGCTCATTTCTGCACAGTTCCTTCACAAAGAGCTTCCCATTAGAATTGCAAGGAGAGCCATTGAGCTTCACTCTCTCCCTCATGGCTTGTCTCACATGCCTCCTGTCTTGAAGGTTAGACATTGGTACTTGGATTCTTTCCGTGAAATTATATCTTTCCCTGAGATCAAGAATATGAATGACGAGAAAGAATTCACCGAACTGATTAAGGCCATCAAGGTGAGACACAACAATGTGGTACCTACAATGGCCTTGGGTGTTCAGCAATTGAAGAATGTTTTTGAGGATCCTGATGAGATTGATGAGTTTCTTGATCGCTTTTACATGTCAAGAATTGGAATTCGTATGCTCATCGGGCAGCATGTTGAGTTGCACAATCCGAATCCTCCTCCCAATTGTGTAGGTTATATACATACAAATATGTCTCCTGTGAATGTGGCAAGGAATGCTAGTGAGGATGCACGTTCTATGTGTTATCGCGAATATGGCAGTGCCGCAGAAGTTCGCATTTACGGGGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGGTATTTGAGTTGGTTAAGAACTCGCTGCGTGCTGTCCAAGAGCGTTTTATGGACTCTGACGAAGTTGCTCCTCCCATTAGAATAATAATAGCAGATGGAATAGAGGATGTTACCATAAAGGTCTCAGATGAGGGAGGTGGAATACCAAGGAGTGGTCTTCCAAGAATTTTTACATATCTCTACAGTACAGCCAAAAACTCATCGTCAGTTGAACATGAACCTTCTGATATTGGAACAATGGAAAATGTAACTATGGCTGGATATGGTTATGGACTTCCTATTTGCCGCTTGTATGCTAGGTATTTTGGTGGTGATCTTCAAGTAATCTCTATGGAAGGATATGGGACTGACGCATATCTCCATTTGTCTCGTTTGGGGGATTCGCAAGAACCTTTGCCCTGA >Glyma17g04470.2 sequence type=CDS gene model=Glyma17g04470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGTTAACATTGAGAAAACGTTGCTAATGTGTAAGAGTTTCATGAAAGAGGTAAAGATATGGGGTTGTTTGAAGCAGACAGGGGTCAGCCTGAGATACATGATGGAGTTTGGTTCCAACCCCACTCAGAAGAATTTGCTCATTTCTGCACAGTTCCTTCACAAAGAGCTTCCCATTAGAATTGCAAGGAGAGCCATTGAGCTTCACTCTCTCCCTCATGGCTTGTCTCACATGCCTCCTGTCTTGAAGGTTAGACATTGGTACTTGGATTCTTTCCGTGAAATTATATCTTTCCCTGAGATCAAGAATATGAATGACGAGAAAGAATTCACCGAACTGATTAAGGCCATCAAGGTGAGACACAACAATGTGGTACCTACAATGGCCTTGGGTGTTCAGCAATTGAAGAATGTTTTTGAGGATCCTGATGAGATTGATGAGTTTCTTGATCGCTTTTACATGTCAAGAATTGGAATTCGTATGCTCATCGGGCAGCATGTTGAGTTGCACAATCCGAATCCTCCTCCCAATTGTGTAGGTTATATACATACAAATATGTCTCCTGTGAATGTGGCAAGGAATGCTAGTGAGGATGCACGTTCTATGTGTTATCGCGAATATGGCAGTGCCGCAGAAGTTCGCATTTACGGGGATCCTGATTTTACTTTTCCGTATGTTCCAGCTCACTTGCATCTTATGGTATTTGAGTTGGTTAAGAACTCGCTGCGTGCTGTCCAAGAGCGTTTTATGGACTCTGACGAAGTTGCTCCTCCCATTAGAATAATAATAGCAGATGGAATAGAGGATGTTACCATAAAGGTAAGTTTCTATAACTTTTAA
>Glyma17g04470.1 sequence type=predicted peptide gene model=Glyma17g04470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEVNIEKTLLMCKSFMKEVKIWGCLKQTGVSLRYMMEFGSNPTQKNLLISAQFLHKELPIRIARRAIELHSLPHGLSHMPPVLKVRHWYLDSFREIISFPEIKNMNDEKEFTELIKAIKVRHNNVVPTMALGVQQLKNVFEDPDEIDEFLDRFYMSRIGIRMLIGQHVELHNPNPPPNCVGYIHTNMSPVNVARNASEDARSMCYREYGSAAEVRIYGDPDFTFPYVPAHLHLMVFELVKNSLRAVQERFMDSDEVAPPIRIIIADGIEDVTIKVSDEGGGIPRSGLPRIFTYLYSTAKNSSSVEHEPSDIGTMENVTMAGYGYGLPICRLYARYFGGDLQVISMEGYGTDAYLHLSRLGDSQEPLP* >Glyma17g04470.2 sequence type=predicted peptide gene model=Glyma17g04470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEVNIEKTLLMCKSFMKEVKIWGCLKQTGVSLRYMMEFGSNPTQKNLLISAQFLHKELPIRIARRAIELHSLPHGLSHMPPVLKVRHWYLDSFREIISFPEIKNMNDEKEFTELIKAIKVRHNNVVPTMALGVQQLKNVFEDPDEIDEFLDRFYMSRIGIRMLIGQHVELHNPNPPPNCVGYIHTNMSPVNVARNASEDARSMCYREYGSAAEVRIYGDPDFTFPYVPAHLHLMVFELVKNSLRAVQERFMDSDEVAPPIRIIIADGIEDVTIKVSFYNF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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