SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G17440 | AT | Annotation by Michelle Graham. TAIR10: novel plant snare 13 | chr3:5969909-5972290 REVERSE LENGTH=269 | SoyBase | E_val: 5.00E-157 | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1666 | KOG | V-SNARE | JGI | ISS | |
| PTHR21230 | Panther | VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED | JGI | ISS | |
| PTHR21230:SF2 | Panther | NOVEL PLANT SNARE | JGI | ISS | |
| PF03908 | PFAM | Sec20 | JGI | ISS | |
| PF12352 | PFAM | Snare region anchored in the vesicle membrane C-terminus | JGI | ISS | |
| UniRef100_B9S000 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Novel plant snare, putative n=1 Tax=Ricinus communis RepID=B9S000_RICCO | SoyBase | E_val: 4.00E-160 | ISS |
| UniRef100_I1MRY0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MRY0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma17g04460 not represented in the dataset |
Glyma17g04460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g18030 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g040400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g04460.2 sequence type=transcript gene model=Glyma17g04460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTAAAAGAAAAGAGAAAACGGAATGGATTAATCTCATAATAAAACATTGTCTGACAACGGTTCTCTTTCCTAATTCCTTTGTTTGTTCCATCATTGTATTGTACAGCACAGCCCCAACTTCTTCCTTGTGTTCTGTTCTGTTCTGTTCTCTCTTTCTCTTTCTCTTCTTTTTTTCCACGCGATTCTTTCAATTTTCAATTTTGATTCAATCACATTCTTCTTTTACATTCTCGATTCCTTCCTTCCTTACTTAAAAATTCTTATATTATGCATCATTTCTCACCAACCACCTAGGGTTTCTCTCCGACGTTAGGTTTTTTTTTCTCGCCGGGATTTTGGGGGCAGACTTAATCTCCGGCAGCTATGGCCTCCAACTTGCAGATGAGTCCTCAGGTGGAGCAGATCCACGGTGAAATCCGCGACAACTTTCGAGCCCTCGCAAATGGCTTCCAGAAGCTGGATAAGATTAAAGATGCCAATAGACAAAGTAATCAGCTGGAAGAACTCACGGACAAGATGAGGGAGTGCAAAAGGTTGATAAAGGAGTATGATCGTGAGATTAAAGATGAAGAGGGAAGAAATCCCCCAGAAGTGAATAAGCAGCTCAATGATGAAAAGCAATCAATGATCAAGGAGCTAAACTCATATGTGGCATTGAGAAAAACGTACATGAATACCATTGGAAATAAAAAACTTGAACTTTTTGACAATGGAGCAGGAGCAAGTGTATCTACAGCTGAAGAAAATGTTCAACTGGCATCAGAAATGTCAAATCAAGAACTTATCAATGCTGGGACGAAGACAATGGATGAAACTGATCAGGCTATTGAGAGATCTAAGCAGGTTGTACATCAAACAATTGAAGTTGGCACCCAAACTGCTGCTACCTTGAAAGGCCAAACTGAACAAATGGGTCGTATTGTTAATGAGCTTGATTCAATTCAGTTCTCAATTAAGAAGGCCTCCCAACTTGTTAAGGAGATTGGTAGACAGGTTGCTTCATTTTCATTGCTTCCATGCATTATTTACTTTCCTCAAACCTGTCATGGAACTGAATTGTCTTTCCATGTTATCAGGTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTCGTGAAGATTGTGCATCCCAACAACAAAGATATTAGGGATATACCAGGATTGGCACCTCCAGTTCCCACCAGGAGGCTTTTGTATGCAAGGAGTGGAGATCATTTTGATTAATTCTTATATTTGAACAAGAGTGAACTTCATCCTAGTCCTACCAACTTGATTATTGTTCTCATTAATGGGAAAGTTAGAGGATTGCTGTCTGGAGGCATTATTTTGGTCTCATCGGTTAATGAAATATATATATACACACACACTTGCATACCCTGTTTGTGATTTTATGTAAATCACACGAAAGCCTTCTGCTTTTTCTTGAGTGCCATGTTTCTTTATGTAACATTCCAAAAGTGTAGGACTAGAGAGAAAGCAATACTGTGAAATTCGTTCTGTATATGTCTAATTCAAAGGAGATTTATCCCTCCCCCCTCTTCATTGTTATTAAATTTTTTTTATTTATTTCTGTACACATTCCAAACTGTCTGCTGGATTGGTTTTGTAAAATTACATTCAGAGTTGGCTTGCAGCTGTTCATATTTAGCTTCTTTACTTAGACCTTCAAGCCTTATAATGTGTTTCATTTAACTTATTTTTAGAGAAAAAAATGTTTTTTCAGTT
>Glyma17g04460.1 sequence type=CDS gene model=Glyma17g04460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTCCAACTTGCAGATGAGTCCTCAGGTGGAGCAGATCCACGGTGAAATCCGCGACAACTTTCGAGCCCTCGCAAATGGCTTCCAGAAGCTGGATAAGATTAAAGATGCCAATAGACAAAGTAATCAGCTGGAAGAACTCACGGACAAGATGAGGGAGTGCAAAAGGTTGATAAAGGAGTATGATCGTGAGATTAAAGATGAAGAGGGAAGAAATCCCCCAGAAGTGAATAAGCAGCTCAATGATGAAAAGCAATCAATGATCAAGGAGCTAAACTCATATGTGGCATTGAGAAAAACGTACATGAATACCATTGGAAATAAAAAACTTGAACTTTTTGACAATGGAGCAGGAGCAAGTGTATCTACAGCTGAAGAAAATGTTCAACTGGCATCAGAAATGTCAAATCAAGAACTTATCAATGCTGGGACGAAGACAATGGATGAAACTGATCAGGCTATTGAGAGATCTAAGCAGGTTGTACATCAAACAATTGAAGTTGGCACCCAAACTGCTGCTACCTTGAAAGGCCAAACTGAACAAATGGGTCGTATTGTTAATGAGCTTGATTCAATTCAGTTCTCAATTAAGAAGGCCTCCCAACTTGTTAAGGAGATTGGTAGACAGGTAGCTACTGACAAGTGCATCATGCTTTTTCTGTTCCTTATTGTCTGTGGTGTAATTGCCATTATTGTCGTGAAGATTGTGCATCCCAACAACAAAGATATTAGGGATATACCAGGATTGGCACCTCCAGTTCCCACCAGGAGGCTTTTGTATGCAAGGAGTGGAGATCATTTTGATTAA >Glyma17g04460.2 sequence type=CDS gene model=Glyma17g04460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTCCAACTTGCAGATGAGTCCTCAGGTGGAGCAGATCCACGGTGAAATCCGCGACAACTTTCGAGCCCTCGCAAATGGCTTCCAGAAGCTGGATAAGATTAAAGATGCCAATAGACAAAGTAATCAGCTGGAAGAACTCACGGACAAGATGAGGGAGTGCAAAAGGTTGATAAAGGAGTATGATCGTGAGATTAAAGATGAAGAGGGAAGAAATCCCCCAGAAGTGAATAAGCAGCTCAATGATGAAAAGCAATCAATGATCAAGGAGCTAAACTCATATGTGGCATTGAGAAAAACGTACATGAATACCATTGGAAATAAAAAACTTGAACTTTTTGACAATGGAGCAGGAGCAAGTGTATCTACAGCTGAAGAAAATGTTCAACTGGCATCAGAAATGTCAAATCAAGAACTTATCAATGCTGGGACGAAGACAATGGATGAAACTGATCAGGCTATTGAGAGATCTAAGCAGGTTGTACATCAAACAATTGAAGTTGGCACCCAAACTGCTGCTACCTTGAAAGGCCAAACTGAACAAATGGGTCGTATTGTTAATGAGCTTGATTCAATTCAGTTCTCAATTAAGAAGGCCTCCCAACTTGTTAAGGAGATTGGTAGACAGGTTGCTTCATTTTCATTGCTTCCATGCATTATTTACTTTCCTCAAACCTGTCATGGAACTGAATTGTCTTTCCATGTTATCAGGTAG
>Glyma17g04460.1 sequence type=predicted peptide gene model=Glyma17g04460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASNLQMSPQVEQIHGEIRDNFRALANGFQKLDKIKDANRQSNQLEELTDKMRECKRLIKEYDREIKDEEGRNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDNGAGASVSTAEENVQLASEMSNQELINAGTKTMDETDQAIERSKQVVHQTIEVGTQTAATLKGQTEQMGRIVNELDSIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVHPNNKDIRDIPGLAPPVPTRRLLYARSGDHFD* >Glyma17g04460.2 sequence type=predicted peptide gene model=Glyma17g04460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASNLQMSPQVEQIHGEIRDNFRALANGFQKLDKIKDANRQSNQLEELTDKMRECKRLIKEYDREIKDEEGRNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNTIGNKKLELFDNGAGASVSTAEENVQLASEMSNQELINAGTKTMDETDQAIERSKQVVHQTIEVGTQTAATLKGQTEQMGRIVNELDSIQFSIKKASQLVKEIGRQVASFSLLPCIIYFPQTCHGTELSFHVIR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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