Glyma17g04330 - SoyBase

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Report for Sequence Feature Glyma17g04330

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2899371
stop:	2901693
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g04330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17390	AT	Annotation by Michelle Graham. TAIR10: S-adenosylmethionine synthetase family protein \| chr3:5952484-5953665 REVERSE LENGTH=393	SoyBase	E_val: 0	ISS
GO:0006555	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine metabolic process	SoyBase	N/A	ISS
GO:0006556	GO-bp	Annotation by Michelle Graham. GO Biological Process: S-adenosylmethionine biosynthetic process	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009809	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004478	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methionine adenosyltransferase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG1506	KOG	S-adenosylmethionine synthetase	JGI		ISS
PTHR11964	Panther	S-ADENOSYLMETHIONINE SYNTHETASE	JGI		ISS
PF00438	PFAM	S-adenosylmethionine synthetase, N-terminal domain	JGI		ISS
PF02772	PFAM	S-adenosylmethionine synthetase, central domain	JGI		ISS
PF02773	PFAM	S-adenosylmethionine synthetase, C-terminal domain	JGI		ISS
UniRef100_I1MRW7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine synthase n=1 Tax=Glycine max RepID=I1MRW7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1MRW7	UniRef	Annotation by Michelle Graham. Best UniRef hit: S-adenosylmethionine synthase n=1 Tax=Glycine max RepID=I1MRW7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g04330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g04330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g039000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g04330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g04330

Limit To All Plant Sequences

>Glyma17g04330.1   sequence type=CDS   gene model=Glyma17g04330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGACATTCCTATTTACCTCAGAGTCAGTGAACGAGGGACACCCTGACAAGCTCTGTGACCAAATCTCTGATGCTGTCCTCGACGCTTGCCTCGAACAGGACCCAGACAGCAAGGTTGCCTGCGAAACATGCACCAAAACCAACTTGGTCATGGTCTTCGGAGAAATCACGACCAAGGCCAATGTTGACTACGAGAAGATAGTGCGTGACACCTGCAGGAACATCGGCTTTGTCTCAAACGATGTGGGACTGGATGCCGACAACTGCAAGGTCCTCGTCAACATTGAGCAGCAGAGCCCTGATATTGCTCAGGGTGTACACGGCCACCTCACCAAAAAACCTGAAGAAATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCCACTGATGAAACCCCTGAATTGATGCCATTGAGCCATGTTCTTGCAACAAAACTCGGTGCTCGTCTCACCGAGGTTCGCAAGAACGGTACCTGCCCTTGGCTGAGGCCTGATGGGAAGACCCAAGTGACCGTTGAGTATTACAATGACAATGGTGCCAGGGTTCCGGTTCGTGTCCACACCGTGCTAATCTCCACCCAACACGACGAGACTGTCACCAATGACGAAATTGCTGCTGACCTCAAAGAGCATGTGATCAAGCCTGTGATCCCAGAGAAGTACCTTGATGAGAAGACCATTTTCCACTTGAACCCTTCAGGCCGTTTTGTCATTGGTGGCCCTCATGGCGATGCTGGTCTCACCGGCCGCAAGATCATTATCGATACTTATGGAGGATGGGGTGCTCATGGTGGTGGTGCTTTCTCCGGCAAGGACCCTACCAAGGTTGATAGGAGTGGTGCTTACATTGTGAGACAGGCTGCTAAGAGCATTGTGGCAAGTGGACTTGCCAGAAGGTGCATTGTGCAAGTGTCTTATGCCATTGGTGTGCCTGAGCCTTTGTCTGTGTTTGTTGACACCTATGGCACTGGAAAGATCCCTGACAAGGAGATCCTTAACATTGTGAAGGAGAACTTTGATTTCAGGCCTGGTATGATCTCCATCAACCTTGATCTCAAGAGGGGTGGAAATAACAGGTTTTTGAAGACTGCTGCATATGGACACTTTGGAAGAGAGGACCCTGACTTCACATGGGAAGTGATCAAGCCACTCAAGTGGGAGGAGGCCTAA

Predicted protein sequences of Glyma17g04330

Limit To All Plant Sequences

>Glyma17g04330.1   sequence type=predicted peptide   gene model=Glyma17g04330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVDYEKIVRDTCRNIGFVSNDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDNGARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILNIVKENFDFRPGMISINLDLKRGGNNRFLKTAAYGHFGREDPDFTWEVIKPLKWEEA*

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