Glyma17g04310 - SoyBase

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Report for Sequence Feature Glyma17g04310

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2882121
stop:	2890411
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g04310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09410	AT	Annotation by Michelle Graham. TAIR10: ethylene induced calmodulin binding protein \| chr5:2921457-2927291 FORWARD LENGTH=1007	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0050826	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to freezing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
KOG0520	KOG	Uncharacterized conserved protein, contains IPT/TIG domain	JGI		ISS
PTHR23335	Panther	IQ CALMODULIN-BINDING MOTIF PROTEINS	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
PF01833	PFAM	IPT/TIG domain	JGI		ISS
PF03859	PFAM	CG-1 domain	JGI		ISS
UniRef100_B9RZY1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin-binding transcription activator (Camta), plants, putative n=1 Tax=Ricinus communis RepID=B9RZY1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F39C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F39C related cluster n=1 Tax=unknown RepID=UPI000233F39C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g04310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma17g04310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g038800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g04310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g04310

Limit To All Plant Sequences

>Glyma17g04310.2   sequence type=CDS   gene model=Glyma17g04310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAGACCACAAAATACATTCCCAACTCACAATTAGAGCTTGAAGAGATATTGAATGAAGCAGAACATCGATGGCTTCGACCTGCTGAAATATGTGAGATACTTCGCAATCATAAGAAGTTTAAATTAACACCAGATCCACCTGTTATGCCTCCAGCTGGATCACTATTCTTGTTTGATCGAAAAGCACTTCGTTACTTTCGCAAGGATGGTCACCGGTGGAGGAAGAAAAAAGATGGGAAGACTGTAAGAGAAGCTCATGAAAAGTTGAAGGCTGGTAGTGTGGATGTCTTGCATTGTTACTATGCTCATGGTGAGGATAATGAATACTTCCAACGGAGAAGTTATTGGATGCTTGACGAGCAGTTAGAGCACATTGTCCTTGTGCATTATCGTGAAATTAAAGAGGGCTGCAAGTCTGGCATCTCACATTTGCCTGTAGTTCCAGTAACCCTGGTTGGTAGTTCTCAAAATACTTCAGTGCTTTCCTCTACCAAAATAAATTCACCAATATCTCTAGTTCAGACATCTTTCACATCAAGTGCAAATAAAGTTTATCAGAATGGACGAGCCTCAGAGCATGAGGATGTCAATTCAAAGAATGGTCCTCAAGCCTCCTCTCATGCTCAGCCTATCAGCAATTATGTACTTCACAGTGCACCTTGGCTTACACATGAAGCTGCAGGGTTTTCTGAGTTGTTAAGGAACCCCTTGATTTCATCATGGCCATCTTCTTTCCCTAGCTACTCTCCTGGTACTGGCTTGTCTCCCTGGACCTCAATTCAGAACTCTAGCAGAAACACAATTAATATGCATGATGGAAAGCATCATGTTGAAGCCTCTGAAGCAGACTTAACTGTTCGTAAGCTAAGCAATGCTGGGTTAGATTCTGTTCACCGAATGCAAGATGGTGTAATTTTCAGAGATAGGCTCATCACTGACATGTGCGTCCAGCCAGTTATAGATTTGCCTACTGTTAATCAGGTGAAAAACGAGCATGGTCTGGATTCATTTCATGCTCAAGTCCATGATCATAATGATCATCCAGTTGTTGCAACTACTAAAATCCTAGTTGAACAAAAACTTCAAGATGGTGGTTTATACAATGATGAATCAGAACAAGTTGAATATGGAGAAATGAAGAAACTTGATAGTTTTGGAAGGTGGATGGATAAGGAAATTGGTGGAGACTGTGATAATTCCTTGATGGCTTCAGATTCTGGTAATTATTGGAGCACACTTGATGCTCATAGTGAGGATAAGGAGGTATCTAGTTTACGCCACATGCAGTTGGATGTGGATTCATTAGGTCCTTCTCTTTCCCAAGAACAACTATTTAGTATCCATGACTTTTCTCCTGATTGGGCATATACTGGAGTTAGAACAAAGGTTTTAATAGTTGGCACATTTCTGGGGAGTAAAAAGCCCTCTAGTGAGACCAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCAGCTGAAGTTTTGGCGGATAATGTCATAAGGTGTCAGACTCCTTTGCATTCACCTGGACGTGTACCATTCTATATTACCTGCAGTAATAGGTTAGCCTGCAGTGAGGTCAGGGAATTTGAATTTGATGAAAATCCAACCAAATTTTTAGGTCCTGAGGGTATTAAAATCTCACCAGAAGAAGAGGTACGACTTCAAATGCGACTTCTTAAACTAGTAGACTTGGGACCTGACAATAAGTGGTTGAAGTGCTCCGTTTCAGAATGCGAAAAATGTAAACTCAAGGGAACAATGTATTCCGTGAGAGATGATAGTGGAGTATTTGAAGAAACTTTCCAGATTGATGGAATTGGTCATATAAACCATAGAGATATATTATTTCAGAGATTAGTGAGAGACAAGCTTTATGAGTGGTTGATATATAAGGTTCATGAAGGAGGAAAAGGACCACATGTGTTGGATGATGAAGGACAAGGAGTAATACATTTGGCAGCGGCACTTGGTTATGTGTGGGCTATGGCCCCATTAGTTGCAGCTGGTATCAGTCCTAACTTCAGAGACTCTCGTGGAAGAACAGGACTTCACTGGGCATCATATTTTGGGAGAGAAGAAACTGTTATTGTGCTAGTTCAGTTAGGTGCAACCCCAGGTGCTGTTGAGGATCCGACATCAGCATTTCCTCGAGGACAAACGGCAGCTGATTTAGGTTCAAGTAGAGGACATAAAGGCATTGCTGGGTATTTGGCAGAGGCAGATCTGACAAATCAATTATCTGTATTGACTGTCAAGGAAAATGAAACTGGCAACATTGCCACAACAATAGCAGCTAACAGTGCTCTTCAGTCTGTTGAAGATGACTCATCTAGTATGACAATGGATGAGCAACATTATCTCAAAGAGTCACTTGCTGTGTTTCAAAAATCAGCTCATGCAGCTGCTTCAATCCTAGCAGCCTTTAGAGCAAGGTCATTCTGTCAGAGACAATTAGCCCAAAGTAGCAGTGATATTTCTGAAGTACTTGACGTAGTTGCTGATTCTTTGAGCAAGGTACAGAACAAGGGTCACTTTGAGGATTATTTACATTTTGCAGCTTTAAAGATTCAAAAGAGATATCGGGGATGGAAAGGAAGAAAGGATTTTTTGAAGATACGTGACCGCATTGTAAAAATCCAGGCTCATATTAGAGGACACCAAGTTCGTAAGCAGTACAAAAAAGTTGTGTGGTCTGTTAGCATTGTGGAAAAAGCAATCCTGCGCTGGAGACGGAAAGGGGCTGGTCTGCGAGGATTCCGGGTTGGGCAGCCAGTTGGTGTTGTGGTTAAAGATGCCGAGAAAAGTGACGAGTATGAATTTCTTAGCATTGGGAGGAGACAAAAATCAGATGATGTAAAGAAAGCTCTAGATAGAGTCAAGTCCATGGTTCGTAACCCAGAGGCAAGGGATCAGTATATGAGGCTCATCATGAAATATGAAAAGTTTAAGATTGATGATGGAGGAAGCAGTCAATCACAGCATGTCGGTTAG

Predicted protein sequences of Glyma17g04310

Limit To All Plant Sequences

>Glyma17g04310.2   sequence type=predicted peptide   gene model=Glyma17g04310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAETTKYIPNSQLELEEILNEAEHRWLRPAEICEILRNHKKFKLTPDPPVMPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNEYFQRRSYWMLDEQLEHIVLVHYREIKEGCKSGISHLPVVPVTLVGSSQNTSVLSSTKINSPISLVQTSFTSSANKVYQNGRASEHEDVNSKNGPQASSHAQPISNYVLHSAPWLTHEAAGFSELLRNPLISSWPSSFPSYSPGTGLSPWTSIQNSSRNTINMHDGKHHVEASEADLTVRKLSNAGLDSVHRMQDGVIFRDRLITDMCVQPVIDLPTVNQVKNEHGLDSFHAQVHDHNDHPVVATTKILVEQKLQDGGLYNDESEQVEYGEMKKLDSFGRWMDKEIGGDCDNSLMASDSGNYWSTLDAHSEDKEVSSLRHMQLDVDSLGPSLSQEQLFSIHDFSPDWAYTGVRTKVLIVGTFLGSKKPSSETKWGCMFGEIEVSAEVLADNVIRCQTPLHSPGRVPFYITCSNRLACSEVREFEFDENPTKFLGPEGIKISPEEEVRLQMRLLKLVDLGPDNKWLKCSVSECEKCKLKGTMYSVRDDSGVFEETFQIDGIGHINHRDILFQRLVRDKLYEWLIYKVHEGGKGPHVLDDEGQGVIHLAAALGYVWAMAPLVAAGISPNFRDSRGRTGLHWASYFGREETVIVLVQLGATPGAVEDPTSAFPRGQTAADLGSSRGHKGIAGYLAEADLTNQLSVLTVKENETGNIATTIAANSALQSVEDDSSSMTMDEQHYLKESLAVFQKSAHAAASILAAFRARSFCQRQLAQSSSDISEVLDVVADSLSKVQNKGHFEDYLHFAALKIQKRYRGWKGRKDFLKIRDRIVKIQAHIRGHQVRKQYKKVVWSVSIVEKAILRWRRKGAGLRGFRVGQPVGVVVKDAEKSDEYEFLSIGRRQKSDDVKKALDRVKSMVRNPEARDQYMRLIMKYEKFKIDDGGSSQSQHVG*

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