SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G17310 | AT | Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:5909294-5912838 REVERSE LENGTH=710 | SoyBase | E_val: 2.00E-156 | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008168 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity | SoyBase | N/A | ISS |
| PTHR23068 | Panther | DNA (CYTOSINE-5-)-METHYLTRANSFERASE 3-RELATED | JGI | ISS | |
| PF00145 | PFAM | C-5 cytosine-specific DNA methylase | JGI | ISS | |
| UniRef100_G7JQ09 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA (Cytosine-5)-methyltransferase DRM2 n=1 Tax=Medicago truncatula RepID=G7JQ09_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233F39A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F39A related cluster n=1 Tax=unknown RepID=UPI000233F39A | SoyBase | E_val: 0 | ISS |
|
Glyma17g04254 not represented in the dataset |
Glyma17g04254 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g36081 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.17g038300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma17g04254.2 sequence type=transcript gene model=Glyma17g04254 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGTTCAGTTCAATCTACTTTTACTGTCACAGTGAAATCTGAATTACTACTTTTCTGTGTGTGTATTTCTTCTCTTCCTGTCTGGGAGGAGGAATCTCAGTCTAGCTTCACTCGGCCGTGGAGCGAGTGTACACCACGCGCCGCTCCCTCTCCAATCAGGTAAAATGGCAGGGAATTCAAATAGAAGAGAAGGAAAACCTGTTATGGTTCCAAAAACTGAGGATTTGGGTTATGAGTTACCACCTTATACTTCATTTTCAGGGGATGTTGGGGACAATGTTGCAAGTTCTTCTGGAGGCAAACTACGAGCATTCTTTATCGGAATGGGATTCCTACCATGCCTTGTCGATAAAGTGATAGAGGAGAATGGTGAAGAGAATTCTGATACTTTATTAGAGGCTCTCTTGAGATATTCTGCTCATAAATCCAATTGTGACTCATTTGATTCTTTGGGTGTTTCTCACAATACAAGCAGGGGTAGAAGTGCCCCAAATTTCTATCCTGATGGTCACTCAAAAGAGGCTCTTCAAAAATCAAATTCACAGTCTTCTGATTCTCTGGATAGCTTATTTGATGATAAGGATCCTCCAGAGATTTCCAATGTCAATCAAGCGAAGGAGGAGCCTGATGAACTTAGTGGAGTCATTGATGATAAAAGAGGTTCCTTACTAATGATGAATTTCTCGGTGGAGGAAGTTGAGCTTGCAATCCACAAGCTTGGTGATGAAGCATCAATTCCTGAGCTGGTGGATTTCATCTTTGCTTGGCAGATTGCTAAAAAATTGAAAAAGGAACCAGATGATATCACCTTCACCTATTATGGCAGAGGAAATGAGGTCACCAATGAAAAACTCTTTGGAATTATGGCAAAAACACTTCAATTGTTTGAAATGGGTTTCTCTGAGAATGAAGTATCATCAGCAATTGATAAATTAGGTTCAGAGGCTCCAATTTCAGAGCTTGCAAACTTTATTTTTGCAGAACAAAATGGGATCGATTATGTGATGGAATATAAGTTTCCCACCACTTCTACTTATTCTGTGGGGATCAAAGAAGAACCAGAAATGGATTTATATGGTACGGCCGAAGTGAAAGTTGAGGATTTTAGCAATGAACCTCCACAATCAAGCCAGGTCAACTTAGAGGAAACTTATAATGAAGATATGGTGAAGGAAGAAGAGGGTATTGATGCATTTCCCAGCTATGTTTCTGACCAATATTTGGATGTTGTGGAGAATGGTAGAGGTAAAAGGCCCAAGTATGAACATGATGATGATTCAATCACTTGTCTTGAACCTTCTTGGGTGGAAGAAAGGGTTGATGTTGTTGTTGCCGAAATGTCAAGACGTCCCAAACCAAATCCATCCAGGTGTCTTAGTAGTGTGGCAGCAAAGCCACCATTTTTCTTATTTGGGAATGTTTCAAACATATCCTACGACTCATGGACAAAGATGTCTAAGTTTTTATATGGTATTGAACCTGAATTTGCGAATGCTCAGTCCTTTTCTGCTTTAGATAGAATAGAAGGTTACATACACAATCTTCCAGTTGAAAACAGATTCCACATCCTCCCAAAGCCACCTATGACTATTGAAGATGCAATGCCGCTGACAAAGAAATGGTGGCCACCTTGGGATTCAAGGAAGCAGTTGAGCAGCATCTATTGTGAAACTAATGGAATAGCTCAAACATGCGATCGACTAGGAAATATTCTTGCAGATTCTGGTGGAGTGCTCACATCTGAACTGCAGAAAGACATTCTTCGTTATTGCCGCGGATTGAATCTTGTGTGGATTGGAAAATTCAAACTTGGTCCTGTAGAGCCTGAACAGTTGGAGCTCATTTTAGGATACCCTTTGAATCACACTCGTGCTTCTGAGGGCAATGTGGCCGAAAGACTTAAATCACTAAAATACTGCTTCCAGACAGACACATTGGGGTATCATCTTTCTGTGTTAAGGCCCATCTTCCCTCATGGATTAACAATGTTATCACTCTTTAGTGGCCTTGGTGGGGCAGAAATTGCCCTACACCGCCTTGGTATTAAAATAAAAGTTGTTGTCTCAGTTGAGACCTCCGAGACAAAAAGAAAGATTCTTGAGAGGTGGTGGCGTCAATCCGGACAAACTGGGACTTTGGTTCAGTTGGAGGATATTCAGAAGCTGACTAGTAAAAAACTTGAGGGTCTAATCAGTAAATTTGGTGGTTTTGACCTTGTCATTTACCAAAACCCATGCTCTAACTTGAGTTCTAGGCTTCTAGCTGGTGTAGGTCTCCCAGCTCTTGAATTTTCAGTGTTTTGTGAATGTGTTCGTGTCTTGCAACGTATAAGAGGTATGTATCAAAGGAAGTGAGTGAAGTGACTCGTATCTTGTTGTACAAAATAATGTCATTCGATGCCTTTGGTGGTGGCATTTCCCCGTTTTGAATGTTTCATTTTCCTGCTGTATGTGACTTCTTCATATAAATTTTTCAGTGCAGGGAATTTGTATGTAGGGTTGTGTTTCTTTCTTAATCGTCCATAAGAATTGTTCATATATACTGTGTTTGTGATTATGCATTGGCAGGCATTCTGAATTATTTCTGGAATAATACACCAAATGAGAGTACATGAAATGGTATAATTTTAGACTTAAATATTTTTT
>Glyma17g04254.1 sequence type=CDS gene model=Glyma17g04254 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGGGAATTCAAATAGAAGAGAAGGAAAACCTGTTATGGTTCCAAAAACTGAGGATTTGGGTTATGAGTTACCACCTTATACTTCATTTTCAGGGGATGTTGGGGACAATGTTGCAAGTTCTTCTGGAGGCAAACTACGAGCATTCTTTATCGGAATGGGATTCCTACCATGCCTTGTCGATAAAGTGATAGAGGAGAATGGTGAAGAGAATTCTGATACTTTATTAGAGGCTCTCTTGAGATATTCTGCTCATAAATCCAATTGTGACTCATTTGATTCTTTGGGTGTTTCTCACAATACAAGCAGGGGTAGAAGTGCCCCAAATTTCTATCCTGATGGTCACTCAAAAGAGGCTCTTCAAAAATCAAATTCACAGTCTTCTGATTCTCTGGATAGCTTATTTGATGATAAGGATCCTCCAGAGATTTCCAATGTCAATCAAGCGAAGGAGGAGCCTGATGAACTTAGTGGAGTCATTGATGATAAAAGAGGTTCCTTACTAATGATGAATTTCTCGGTGGAGGAAGTTGAGCTTGCAATCCACAAGCTTGGTGATGAAGCATCAATTCCTGAGCTGGTGGATTTCATCTTTGCTTGGCAGATTGCTAAAAAATTGAAAAAGGAACCAGATGATATCACCTTCACCTATTATGGCAGAGGAAATGAGGTCACCAATGAAAAACTCTTTGGAATTATGGCAAAAACACTTCAATTGTTTGAAATGGGTTTCTCTGAGAATGAAGTATCATCAGCAATTGATAAATTAGGTTCAGAGGCTCCAATTTCAGAGCTTGCAAACTTTATTTTTGCAGAACAAAATGGGATCGATTATGTGATGGAATATAAGTTTCCCACCACTTCTACTTATTCTGTGGGGATCAAAGAAGAACCAGAAATGGATTTATATGGTACGGCCGAAGTGAAAGTTGAGGATTTTAGCAATGAACCTCCACAATCAAGCCAGGTCAACTTAGAGGAAACTTATAATGAAGATATGGTGAAGGAAGAAGAGGGTATTGATGCATTTCCCAGCTATGTTTCTGACCAATATTTGGATGTTGTGGAGAATGGTAGAGGTAAAAGGCCCAAGTATGAACATGATGATGATTCAATCACTTGTCTTGAACCTTCTTGGGTGGAAGAAAGGGTTGATGTTGTTGTTGCCGAAATGTCAAGACGTCCCAAACCAAATCCATCCAGGTGTCTTAGTAGTGTGGCAGCAAAGCCACCATTTTTCTTATTTGGGAATGTTTCAAACATATCCTACGACTCATGGACAAAGATGTCTAAGTTTTTATATGGTATTGAACCTGAATTTGCGAATGCTCAGTCCTTTTCTGCTTTAGATAGAATAGAAGGTTACATACACAATCTTCCAGTTGAAAACAGATTCCACATCCTCCCAAAGCCACCTATGACTATTGAAGATGCAATGCCGCTGACAAAGAAATGGTGGCCACCTTGGGATTCAAGGAAGCAGTTGAGCAGCATCTATTGTGAAACTAATGGAATAGCTCAAACATGCGATCGACTAGGAAATATTCTTGCAGATTCTGGTGGAGTGCTCACATCTGAACTGCAGAAAGACATTCTTCGTTATTGCCGCGGATTGAATCTTGTGTGGATTGGAAAATTCAAACTTGGTCCTGTAGAGCCTGAACAGTTGGAGCTCATTTTAGGATACCCTTTGAATCACACTCGTGCTTCTGAGGGCAATGTGGCCGAAAGACTTAAATCACTAAAATACTGCTTCCAGACAGACACATTGGGGTATCATCTTTCTGTGTTAAGGCCCATCTTCCCTCATGGATTAACAATGTTATCACTCTTTAGTGGCCTTGGTGGGGCAGAAATTGCCCTACACCGCCTTGGTATTAAAATAAAAGTTGTTGTCTCAGTTGAGACCTCCGAGACAAAAAGAAAGATTCTTGAGAGGTGGTGGCGTCAATCCGGACAAACTGGGACTTTGGTTCAGTTGGAGGATATTCAGAAGCTGACTAGTAAAAAACTTGAGGGTCTAATCAGTAAATTTGGTGGTTTTGACCTTGTCATTTACCAAAACCCATGCTCTAACTTGAGTTCTAGGCTTCTAGCTGGTGTAGGTCTCCCAGCTCTTGAATTTTCAGTGTTTTGTGAATGTGTTCGTGTCTTGCAACGTATAAGAGGCATTCTGAATTATTTCTGGAATAATACACCAAATGAGAGTACATGA >Glyma17g04254.2 sequence type=CDS gene model=Glyma17g04254 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGGGAATTCAAATAGAAGAGAAGGAAAACCTGTTATGGTTCCAAAAACTGAGGATTTGGGTTATGAGTTACCACCTTATACTTCATTTTCAGGGGATGTTGGGGACAATGTTGCAAGTTCTTCTGGAGGCAAACTACGAGCATTCTTTATCGGAATGGGATTCCTACCATGCCTTGTCGATAAAGTGATAGAGGAGAATGGTGAAGAGAATTCTGATACTTTATTAGAGGCTCTCTTGAGATATTCTGCTCATAAATCCAATTGTGACTCATTTGATTCTTTGGGTGTTTCTCACAATACAAGCAGGGGTAGAAGTGCCCCAAATTTCTATCCTGATGGTCACTCAAAAGAGGCTCTTCAAAAATCAAATTCACAGTCTTCTGATTCTCTGGATAGCTTATTTGATGATAAGGATCCTCCAGAGATTTCCAATGTCAATCAAGCGAAGGAGGAGCCTGATGAACTTAGTGGAGTCATTGATGATAAAAGAGGTTCCTTACTAATGATGAATTTCTCGGTGGAGGAAGTTGAGCTTGCAATCCACAAGCTTGGTGATGAAGCATCAATTCCTGAGCTGGTGGATTTCATCTTTGCTTGGCAGATTGCTAAAAAATTGAAAAAGGAACCAGATGATATCACCTTCACCTATTATGGCAGAGGAAATGAGGTCACCAATGAAAAACTCTTTGGAATTATGGCAAAAACACTTCAATTGTTTGAAATGGGTTTCTCTGAGAATGAAGTATCATCAGCAATTGATAAATTAGGTTCAGAGGCTCCAATTTCAGAGCTTGCAAACTTTATTTTTGCAGAACAAAATGGGATCGATTATGTGATGGAATATAAGTTTCCCACCACTTCTACTTATTCTGTGGGGATCAAAGAAGAACCAGAAATGGATTTATATGGTACGGCCGAAGTGAAAGTTGAGGATTTTAGCAATGAACCTCCACAATCAAGCCAGGTCAACTTAGAGGAAACTTATAATGAAGATATGGTGAAGGAAGAAGAGGGTATTGATGCATTTCCCAGCTATGTTTCTGACCAATATTTGGATGTTGTGGAGAATGGTAGAGGTAAAAGGCCCAAGTATGAACATGATGATGATTCAATCACTTGTCTTGAACCTTCTTGGGTGGAAGAAAGGGTTGATGTTGTTGTTGCCGAAATGTCAAGACGTCCCAAACCAAATCCATCCAGGTGTCTTAGTAGTGTGGCAGCAAAGCCACCATTTTTCTTATTTGGGAATGTTTCAAACATATCCTACGACTCATGGACAAAGATGTCTAAGTTTTTATATGGTATTGAACCTGAATTTGCGAATGCTCAGTCCTTTTCTGCTTTAGATAGAATAGAAGGTTACATACACAATCTTCCAGTTGAAAACAGATTCCACATCCTCCCAAAGCCACCTATGACTATTGAAGATGCAATGCCGCTGACAAAGAAATGGTGGCCACCTTGGGATTCAAGGAAGCAGTTGAGCAGCATCTATTGTGAAACTAATGGAATAGCTCAAACATGCGATCGACTAGGAAATATTCTTGCAGATTCTGGTGGAGTGCTCACATCTGAACTGCAGAAAGACATTCTTCGTTATTGCCGCGGATTGAATCTTGTGTGGATTGGAAAATTCAAACTTGGTCCTGTAGAGCCTGAACAGTTGGAGCTCATTTTAGGATACCCTTTGAATCACACTCGTGCTTCTGAGGGCAATGTGGCCGAAAGACTTAAATCACTAAAATACTGCTTCCAGACAGACACATTGGGGTATCATCTTTCTGTGTTAAGGCCCATCTTCCCTCATGGATTAACAATGTTATCACTCTTTAGTGGCCTTGGTGGGGCAGAAATTGCCCTACACCGCCTTGGTATTAAAATAAAAGTTGTTGTCTCAGTTGAGACCTCCGAGACAAAAAGAAAGATTCTTGAGAGGTGGTGGCGTCAATCCGGACAAACTGGGACTTTGGTTCAGTTGGAGGATATTCAGAAGCTGACTAGTAAAAAACTTGAGGGTCTAATCAGTAAATTTGGTGGTTTTGACCTTGTCATTTACCAAAACCCATGCTCTAACTTGAGTTCTAGGCTTCTAGCTGGTGTAGGTCTCCCAGCTCTTGAATTTTCAGTGTTTTGTGAATGTGTTCGTGTCTTGCAACGTATAAGAGGTATGTATCAAAGGAAGTGA
>Glyma17g04254.1 sequence type=predicted peptide gene model=Glyma17g04254 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGNSNRREGKPVMVPKTEDLGYELPPYTSFSGDVGDNVASSSGGKLRAFFIGMGFLPCLVDKVIEENGEENSDTLLEALLRYSAHKSNCDSFDSLGVSHNTSRGRSAPNFYPDGHSKEALQKSNSQSSDSLDSLFDDKDPPEISNVNQAKEEPDELSGVIDDKRGSLLMMNFSVEEVELAIHKLGDEASIPELVDFIFAWQIAKKLKKEPDDITFTYYGRGNEVTNEKLFGIMAKTLQLFEMGFSENEVSSAIDKLGSEAPISELANFIFAEQNGIDYVMEYKFPTTSTYSVGIKEEPEMDLYGTAEVKVEDFSNEPPQSSQVNLEETYNEDMVKEEEGIDAFPSYVSDQYLDVVENGRGKRPKYEHDDDSITCLEPSWVEERVDVVVAEMSRRPKPNPSRCLSSVAAKPPFFLFGNVSNISYDSWTKMSKFLYGIEPEFANAQSFSALDRIEGYIHNLPVENRFHILPKPPMTIEDAMPLTKKWWPPWDSRKQLSSIYCETNGIAQTCDRLGNILADSGGVLTSELQKDILRYCRGLNLVWIGKFKLGPVEPEQLELILGYPLNHTRASEGNVAERLKSLKYCFQTDTLGYHLSVLRPIFPHGLTMLSLFSGLGGAEIALHRLGIKIKVVVSVETSETKRKILERWWRQSGQTGTLVQLEDIQKLTSKKLEGLISKFGGFDLVIYQNPCSNLSSRLLAGVGLPALEFSVFCECVRVLQRIRGILNYFWNNTPNEST* >Glyma17g04254.2 sequence type=predicted peptide gene model=Glyma17g04254 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGNSNRREGKPVMVPKTEDLGYELPPYTSFSGDVGDNVASSSGGKLRAFFIGMGFLPCLVDKVIEENGEENSDTLLEALLRYSAHKSNCDSFDSLGVSHNTSRGRSAPNFYPDGHSKEALQKSNSQSSDSLDSLFDDKDPPEISNVNQAKEEPDELSGVIDDKRGSLLMMNFSVEEVELAIHKLGDEASIPELVDFIFAWQIAKKLKKEPDDITFTYYGRGNEVTNEKLFGIMAKTLQLFEMGFSENEVSSAIDKLGSEAPISELANFIFAEQNGIDYVMEYKFPTTSTYSVGIKEEPEMDLYGTAEVKVEDFSNEPPQSSQVNLEETYNEDMVKEEEGIDAFPSYVSDQYLDVVENGRGKRPKYEHDDDSITCLEPSWVEERVDVVVAEMSRRPKPNPSRCLSSVAAKPPFFLFGNVSNISYDSWTKMSKFLYGIEPEFANAQSFSALDRIEGYIHNLPVENRFHILPKPPMTIEDAMPLTKKWWPPWDSRKQLSSIYCETNGIAQTCDRLGNILADSGGVLTSELQKDILRYCRGLNLVWIGKFKLGPVEPEQLELILGYPLNHTRASEGNVAERLKSLKYCFQTDTLGYHLSVLRPIFPHGLTMLSLFSGLGGAEIALHRLGIKIKVVVSVETSETKRKILERWWRQSGQTGTLVQLEDIQKLTSKKLEGLISKFGGFDLVIYQNPCSNLSSRLLAGVGLPALEFSVFCECVRVLQRIRGMYQRK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
