Glyma17g04180 - SoyBase

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Report for Sequence Feature Glyma17g04180

Feature Type:	gene_model
Chromosome:	Gm17
Start:	2781543
stop:	2800188
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma17g04180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17205	AT	Annotation by Michelle Graham. TAIR10: ubiquitin protein ligase 6 \| chr3:5873528-5881132 FORWARD LENGTH=1029	SoyBase	E_val: 0	ISS
GO:0006464	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular protein modification process	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0000151	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0942	KOG	E3 ubiquitin protein ligase	JGI		ISS
PTHR11254	Panther	UBIQUITIN-PROTEIN LIGASE	JGI		ISS
PTHR11254:SF106	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00632	PFAM	HECT-domain (ubiquitin-transferase)	JGI		ISS
UniRef100_B9RZW1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9RZW1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E6A2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E6A2 related cluster n=1 Tax=unknown RepID=UPI000233E6A2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma17g04180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma17g04180

Paralog	Evidence	Comments
Glyma07g36390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma17g04180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.17g037600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma17g04180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma17g04180

Limit To All Plant Sequences

>Glyma17g04180.1   sequence type=CDS   gene model=Glyma17g04180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTTCAGCGGCGATCCTTTTACACGGAAGCGTGTCGATTTGGGAGGTCGAAGTTCAAAGGAAAGGGACCGGAAAAACCTGTTAGAACAAACACGAGTTGAGCGCAACCGGCGCTTATGGTTGCGCCAGCAGAACTCTGCTGTACTCAAAATTCAGAAATGCTTCAGAGGGAGAAAAGCTGTCAGAACTGAACAATCCAAGTTGCGAGAGCAGTTCTATAAAATCTATGGGAAGTATTGCCAGAATGTGGACAGGAATTCTTTTGGTCCAGATTCTAATTTCCTCTGCCAGTTCCTCTATTTCTTTAAGGCAGAAAATATTGAGGACTTCTTAGTTCTTGTGCAAATATGCCGGTTGCTTTGGTGGTCTGTTCAGGATAATGGGGATGTTGTCAAACTTTTTGCGGGGGTGGATTATTCATCCACACGGGCTTTGGTGAACTACCGAGTGAAGCTATTTGTACAAGCTTGTATTTGTGCTCTGCATCAGAATAGAAATCAGTTAAAAGATCAGCTTTTATTGACTCCTGAGGAATTGAATGTGTCAGCTATTCCTTTATTGGAGGTTTTAGTATTGTTAATTGATCCCAAATTGCCATGGAGCTGTAACCTAGTACAATATCTCATTCAAAACAATGGAGTTGGCCTACTCAGAGAGATAGTTCTTACTGGAAAGGATAATGCAGAAAATTGTTTTTCCATTGGCAAGGGATCATCATTGGAGCGTGTGCTTATTGCTGTAATATCTCATGTTGGTCAGAAGCCATGTATCTGTTCACATATTAATCCAAGATATAGCTCTGCATCACAGATCATCACAATTCCTTTCTTGTGGCATCTCTTCCCAAATTTACAACAGATTTTTGCAGCAAACAACCTGAATCAATGTTACATTCATCAAATGGCAAAGTTTGGGCAAAATCTGATCAAGTTGCTACCTAAGGATATATCAAATGAATTTCCGAGCCATGCGTGTATGCTTGGAAATGTATTAGAAACTGCTGGAATTGCTTTGTCTCATCCTAACTGTTCATTTGATATGGCCGTAGACCTTGTTGCTGTCACTACGTTTTTGCTGGAGGCACTCCCATCTCTGAAAACTTCCAATAGTAGAGAAAGCTCTGTGATTGCTAAGGATGATATGATTGAAGACGATGAAGTCATGGAAATAGCTTTAGATAGTAAATTGGAGCAGCAAATTTATAATGCCATAAATCCTCGCTTCCTTCTGCAACTGACAAATATACTATTTAAAGAGATTTCATCTGTCAATGGCTCAGATTATGGACCCAATGATAGAGATGTTACAGCTGTTGATGGGGTTTGTGGGTTTTTGAATGTTACCTTCAACAAGCTGCCACTTGAACGGATTATGACTGTGCTTGCTTACAGAACTGAACTTGTTCCAACACTTTGGAATTTTATGAAGCAGTGTCATGAGAACCAAAAATGGTCATCACACCTCTCAAATGATGCACCTGGTTGGCTGTTACCTCTTGCTGTATTCTGTCCTGTCTACAAGCACATGCTTATGATTGTCGATAATGAAGAATTTTATGAGCAAGAGAAACCGCTATCACTGAAGGACATTAGAAGCCTCATCATTATATTGAGACAGGTTCTGTGGCAGCTACTGTGGGTGAATCATATCACATCTGCTAATTCGGTAAAATCTGTTCCAGTTAGTTCAGCTAGTAAGGGGCAGTCTGTTCAGACCATTCAACAGAGGGTTTGCATTGTAGTCTCTGAGCTTCTCTCCCAGCTGCAAGATTGGAACAATAGGCGGCAGTTTACATCCCCCAGTAACTTCCATGCTGATGGGGTGAATGACTTATTTAGCTCTCAGGCTGTAATAGAAAACACACGAGCAAATGAAATTTTGAAACAGGCCCCTTTCTTGATACCATTTACAAGCAGGGTTAAAATATTCTCTTCTCAACTAGCTGCTGTTAGGCAAAGGCATGGACCTCAAGCTGTATTTTCTAGAAATCGATTCAGGATACAACGAGATCATATTTTGGAAGATGCTTACAATCAAATGAGTCAGTTGACAGAAGATAGTCTTCGAGGATCGATTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATTGATGGTGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAATATGGATTATTTAAGGAAACAGCGGATCACCTGCTTTATCCTAATCCTGGATCTGGAATGATACATGAACAACATTTCCAATTTTTCCACTTCCTTGGTACTCTTCTCGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTTTTCTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCTTCCTTGGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGCATTATAAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAATAATGAATATGGAGAACAAACAGAGGAGGAACTGCTTCCCGGAGGAAGGAACCTACGTGTCACTAATGAGAATGTCATTACTTTTATCCACCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGCCAACAAAGTTCACATTTCTTGAGGGGATTTCAGCAACTTATGCAGAAGGATTGGATTGACATGTTTAATGAACATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGATATTGATGATCTGCGGCTGCATACCAACTATGCAGGAGGCTATCATAATGAGCATTTTGTTATGGAGATGTTTTGGGAAGTTCTCAAAGGCTTTTCATTGGAAAACAGGAAGAAATTTTTGAAGTTTGTGACAGGTTGCTCTCGTGGGCCTTTGCTTGGTTTCCGATATCTTGAACCTATGTTTTGCATACAAAGGGCTTCCGGTAATGCCGTTGAAGAATCACTTGACCGATTACCAACATCGGCTACTTGTATGAATCTACTAAAGCTTCCGCCTTATACAAGCAAGGAGCAATTGGAAACCAAATTACTGTATGCCATAAATGCTGATGCTGGCTTTGATTTAAGTTAA

Predicted protein sequences of Glyma17g04180

Limit To All Plant Sequences

>Glyma17g04180.1   sequence type=predicted peptide   gene model=Glyma17g04180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFFSGDPFTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWLRQQNSAVLKIQKCFRGRKAVRTEQSKLREQFYKIYGKYCQNVDRNSFGPDSNFLCQFLYFFKAENIEDFLVLVQICRLLWWSVQDNGDVVKLFAGVDYSSTRALVNYRVKLFVQACICALHQNRNQLKDQLLLTPEELNVSAIPLLEVLVLLIDPKLPWSCNLVQYLIQNNGVGLLREIVLTGKDNAENCFSIGKGSSLERVLIAVISHVGQKPCICSHINPRYSSASQIITIPFLWHLFPNLQQIFAANNLNQCYIHQMAKFGQNLIKLLPKDISNEFPSHACMLGNVLETAGIALSHPNCSFDMAVDLVAVTTFLLEALPSLKTSNSRESSVIAKDDMIEDDEVMEIALDSKLEQQIYNAINPRFLLQLTNILFKEISSVNGSDYGPNDRDVTAVDGVCGFLNVTFNKLPLERIMTVLAYRTELVPTLWNFMKQCHENQKWSSHLSNDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDIRSLIIILRQVLWQLLWVNHITSANSVKSVPVSSASKGQSVQTIQQRVCIVVSELLSQLQDWNNRRQFTSPSNFHADGVNDLFSSQAVIENTRANEILKQAPFLIPFTSRVKIFSSQLAAVRQRHGPQAVFSRNRFRIQRDHILEDAYNQMSQLTEDSLRGSIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYKGDISELELYFVIVNNEYGEQTEEELLPGGRNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLMQKDWIDMFNEHELQLLISGSLDSLDIDDLRLHTNYAGGYHNEHFVMEMFWEVLKGFSLENRKKFLKFVTGCSRGPLLGFRYLEPMFCIQRASGNAVEESLDRLPTSATCMNLLKLPPYTSKEQLETKLLYAINADAGFDLS*

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